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Towards efficient discovery of green synthetic pathways with Monte Carlo tree search and reinforcement learning

Computer aided synthesis planning of synthetic pathways with green process conditions has become of increasing importance in organic chemistry, but the large search space inherent in synthesis planning and the difficulty in predicting reaction conditions make it a significant challenge. We introduce...

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Autores principales: Wang, Xiaoxue, Qian, Yujie, Gao, Hanyu, Coley, Connor W., Mo, Yiming, Barzilay, Regina, Jensen, Klavs F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8162445/
https://www.ncbi.nlm.nih.gov/pubmed/34094345
http://dx.doi.org/10.1039/d0sc04184j
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author Wang, Xiaoxue
Qian, Yujie
Gao, Hanyu
Coley, Connor W.
Mo, Yiming
Barzilay, Regina
Jensen, Klavs F.
author_facet Wang, Xiaoxue
Qian, Yujie
Gao, Hanyu
Coley, Connor W.
Mo, Yiming
Barzilay, Regina
Jensen, Klavs F.
author_sort Wang, Xiaoxue
collection PubMed
description Computer aided synthesis planning of synthetic pathways with green process conditions has become of increasing importance in organic chemistry, but the large search space inherent in synthesis planning and the difficulty in predicting reaction conditions make it a significant challenge. We introduce a new Monte Carlo Tree Search (MCTS) variant that promotes balance between exploration and exploitation across the synthesis space. Together with a value network trained from reinforcement learning and a solvent-prediction neural network, our algorithm is comparable to the best MCTS variant (PUCT, similar to Google's Alpha Go) in finding valid synthesis pathways within a fixed searching time, and superior in identifying shorter routes with greener solvents under the same search conditions. In addition, with the same root compound visit count, our algorithm outperforms the PUCT MCTS by 16% in terms of determining successful routes. Overall the success rate is improved by 19.7% compared to the upper confidence bound applied to trees (UCT) MCTS method. Moreover, we improve 71.4% of the routes proposed by the PUCT MCTS variant in pathway length and choices of green solvents. The approach generally enables including Green Chemistry considerations in computer aided synthesis planning with potential applications in process development for fine chemicals or pharmaceuticals.
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spelling pubmed-81624452021-06-04 Towards efficient discovery of green synthetic pathways with Monte Carlo tree search and reinforcement learning Wang, Xiaoxue Qian, Yujie Gao, Hanyu Coley, Connor W. Mo, Yiming Barzilay, Regina Jensen, Klavs F. Chem Sci Chemistry Computer aided synthesis planning of synthetic pathways with green process conditions has become of increasing importance in organic chemistry, but the large search space inherent in synthesis planning and the difficulty in predicting reaction conditions make it a significant challenge. We introduce a new Monte Carlo Tree Search (MCTS) variant that promotes balance between exploration and exploitation across the synthesis space. Together with a value network trained from reinforcement learning and a solvent-prediction neural network, our algorithm is comparable to the best MCTS variant (PUCT, similar to Google's Alpha Go) in finding valid synthesis pathways within a fixed searching time, and superior in identifying shorter routes with greener solvents under the same search conditions. In addition, with the same root compound visit count, our algorithm outperforms the PUCT MCTS by 16% in terms of determining successful routes. Overall the success rate is improved by 19.7% compared to the upper confidence bound applied to trees (UCT) MCTS method. Moreover, we improve 71.4% of the routes proposed by the PUCT MCTS variant in pathway length and choices of green solvents. The approach generally enables including Green Chemistry considerations in computer aided synthesis planning with potential applications in process development for fine chemicals or pharmaceuticals. The Royal Society of Chemistry 2020-09-14 /pmc/articles/PMC8162445/ /pubmed/34094345 http://dx.doi.org/10.1039/d0sc04184j Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Wang, Xiaoxue
Qian, Yujie
Gao, Hanyu
Coley, Connor W.
Mo, Yiming
Barzilay, Regina
Jensen, Klavs F.
Towards efficient discovery of green synthetic pathways with Monte Carlo tree search and reinforcement learning
title Towards efficient discovery of green synthetic pathways with Monte Carlo tree search and reinforcement learning
title_full Towards efficient discovery of green synthetic pathways with Monte Carlo tree search and reinforcement learning
title_fullStr Towards efficient discovery of green synthetic pathways with Monte Carlo tree search and reinforcement learning
title_full_unstemmed Towards efficient discovery of green synthetic pathways with Monte Carlo tree search and reinforcement learning
title_short Towards efficient discovery of green synthetic pathways with Monte Carlo tree search and reinforcement learning
title_sort towards efficient discovery of green synthetic pathways with monte carlo tree search and reinforcement learning
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8162445/
https://www.ncbi.nlm.nih.gov/pubmed/34094345
http://dx.doi.org/10.1039/d0sc04184j
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