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Data enhanced Hammett-equation: reaction barriers in chemical space
It is intriguing how the Hammett equation enables control of chemical reactivity throughout chemical space by separating the effect of substituents from chemical process variables, such as reaction mechanism, solvent, or temperature. We generalize Hammett's original approach to predict potentia...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8163012/ https://www.ncbi.nlm.nih.gov/pubmed/34094415 http://dx.doi.org/10.1039/d0sc04235h |
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author | Bragato, Marco von Rudorff, Guido Falk von Lilienfeld, O. Anatole |
author_facet | Bragato, Marco von Rudorff, Guido Falk von Lilienfeld, O. Anatole |
author_sort | Bragato, Marco |
collection | PubMed |
description | It is intriguing how the Hammett equation enables control of chemical reactivity throughout chemical space by separating the effect of substituents from chemical process variables, such as reaction mechanism, solvent, or temperature. We generalize Hammett's original approach to predict potential energies of activation in non aromatic molecular scaffolds with multiple substituents. We use global regression to optimize Hammett parameters ρ and σ in two experimental datasets (rate constants for benzylbromides reacting with thiols and ammonium salt decomposition), as well as in a synthetic dataset consisting of computational activation energies of ∼2400 S(N)2 reactions, with various nucleophiles and leaving groups (–H, –F, –Cl, –Br) and functional groups (–H, –NO(2), –CN, –NH(3), –CH(3)). Individual substituents contribute additively to molecular σ with a unique regression term, which quantifies the inductive effect. The position dependence of substituents can be modeled by a distance decaying factor for S(N)2. Use of the Hammett equation as a base-line model for Δ-machine learning models of the activation energy in chemical space results in substantially improved learning curves reaching low prediction errors for small training sets. |
format | Online Article Text |
id | pubmed-8163012 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-81630122021-06-04 Data enhanced Hammett-equation: reaction barriers in chemical space Bragato, Marco von Rudorff, Guido Falk von Lilienfeld, O. Anatole Chem Sci Chemistry It is intriguing how the Hammett equation enables control of chemical reactivity throughout chemical space by separating the effect of substituents from chemical process variables, such as reaction mechanism, solvent, or temperature. We generalize Hammett's original approach to predict potential energies of activation in non aromatic molecular scaffolds with multiple substituents. We use global regression to optimize Hammett parameters ρ and σ in two experimental datasets (rate constants for benzylbromides reacting with thiols and ammonium salt decomposition), as well as in a synthetic dataset consisting of computational activation energies of ∼2400 S(N)2 reactions, with various nucleophiles and leaving groups (–H, –F, –Cl, –Br) and functional groups (–H, –NO(2), –CN, –NH(3), –CH(3)). Individual substituents contribute additively to molecular σ with a unique regression term, which quantifies the inductive effect. The position dependence of substituents can be modeled by a distance decaying factor for S(N)2. Use of the Hammett equation as a base-line model for Δ-machine learning models of the activation energy in chemical space results in substantially improved learning curves reaching low prediction errors for small training sets. The Royal Society of Chemistry 2020-10-02 /pmc/articles/PMC8163012/ /pubmed/34094415 http://dx.doi.org/10.1039/d0sc04235h Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Bragato, Marco von Rudorff, Guido Falk von Lilienfeld, O. Anatole Data enhanced Hammett-equation: reaction barriers in chemical space |
title | Data enhanced Hammett-equation: reaction barriers in chemical space |
title_full | Data enhanced Hammett-equation: reaction barriers in chemical space |
title_fullStr | Data enhanced Hammett-equation: reaction barriers in chemical space |
title_full_unstemmed | Data enhanced Hammett-equation: reaction barriers in chemical space |
title_short | Data enhanced Hammett-equation: reaction barriers in chemical space |
title_sort | data enhanced hammett-equation: reaction barriers in chemical space |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8163012/ https://www.ncbi.nlm.nih.gov/pubmed/34094415 http://dx.doi.org/10.1039/d0sc04235h |
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