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Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study
The number of new daily infections is one of the main parameters to understand the dynamics of an epidemic. During the COVID-19 pandemic in 2020, however, such information has been underestimated. Here, we propose a retrospective methodology to estimate daily infections from daily deaths, because th...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8163852/ https://www.ncbi.nlm.nih.gov/pubmed/34050198 http://dx.doi.org/10.1038/s41598-021-90051-7 |
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author | García-García, David Vigo, María Isabel Fonfría, Eva S. Herrador, Zaida Navarro, Miriam Bordehore, Cesar |
author_facet | García-García, David Vigo, María Isabel Fonfría, Eva S. Herrador, Zaida Navarro, Miriam Bordehore, Cesar |
author_sort | García-García, David |
collection | PubMed |
description | The number of new daily infections is one of the main parameters to understand the dynamics of an epidemic. During the COVID-19 pandemic in 2020, however, such information has been underestimated. Here, we propose a retrospective methodology to estimate daily infections from daily deaths, because those are usually more accurately documented. Given the incubation period, the time from illness onset to death, and the case fatality ratio, the date of death can be estimated from the date of infection. We apply this idea conversely to estimate infections from deaths. This methodology is applied to Spain and its 19 administrative regions. Our results showed that probable daily infections during the first wave were between 35 and 42 times more than those officially documented on 14 March, when the national government decreed a national lockdown and 9 times more than those documented by the updated version of the official data. The national lockdown had a strong effect on the growth rate of virus transmission, which began to decrease immediately. Finally, the first inferred infection in Spain is about 43 days before the official data were available during the first wave. The current official data show delays of 15–30 days in the first infection relative to the inferred infections in 63% of the regions. In summary, we propose a methodology that allows reinterpretation of official daily infections, improving data accuracy in infection magnitude and dates because it assimilates valuable information from the National Seroprevalence Studies. |
format | Online Article Text |
id | pubmed-8163852 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-81638522021-06-01 Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study García-García, David Vigo, María Isabel Fonfría, Eva S. Herrador, Zaida Navarro, Miriam Bordehore, Cesar Sci Rep Article The number of new daily infections is one of the main parameters to understand the dynamics of an epidemic. During the COVID-19 pandemic in 2020, however, such information has been underestimated. Here, we propose a retrospective methodology to estimate daily infections from daily deaths, because those are usually more accurately documented. Given the incubation period, the time from illness onset to death, and the case fatality ratio, the date of death can be estimated from the date of infection. We apply this idea conversely to estimate infections from deaths. This methodology is applied to Spain and its 19 administrative regions. Our results showed that probable daily infections during the first wave were between 35 and 42 times more than those officially documented on 14 March, when the national government decreed a national lockdown and 9 times more than those documented by the updated version of the official data. The national lockdown had a strong effect on the growth rate of virus transmission, which began to decrease immediately. Finally, the first inferred infection in Spain is about 43 days before the official data were available during the first wave. The current official data show delays of 15–30 days in the first infection relative to the inferred infections in 63% of the regions. In summary, we propose a methodology that allows reinterpretation of official daily infections, improving data accuracy in infection magnitude and dates because it assimilates valuable information from the National Seroprevalence Studies. Nature Publishing Group UK 2021-05-28 /pmc/articles/PMC8163852/ /pubmed/34050198 http://dx.doi.org/10.1038/s41598-021-90051-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article García-García, David Vigo, María Isabel Fonfría, Eva S. Herrador, Zaida Navarro, Miriam Bordehore, Cesar Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study |
title | Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study |
title_full | Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study |
title_fullStr | Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study |
title_full_unstemmed | Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study |
title_short | Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study |
title_sort | retrospective methodology to estimate daily infections from deaths (remedid) in covid-19: the spain case study |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8163852/ https://www.ncbi.nlm.nih.gov/pubmed/34050198 http://dx.doi.org/10.1038/s41598-021-90051-7 |
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