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Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study

The number of new daily infections is one of the main parameters to understand the dynamics of an epidemic. During the COVID-19 pandemic in 2020, however, such information has been underestimated. Here, we propose a retrospective methodology to estimate daily infections from daily deaths, because th...

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Autores principales: García-García, David, Vigo, María Isabel, Fonfría, Eva S., Herrador, Zaida, Navarro, Miriam, Bordehore, Cesar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8163852/
https://www.ncbi.nlm.nih.gov/pubmed/34050198
http://dx.doi.org/10.1038/s41598-021-90051-7
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author García-García, David
Vigo, María Isabel
Fonfría, Eva S.
Herrador, Zaida
Navarro, Miriam
Bordehore, Cesar
author_facet García-García, David
Vigo, María Isabel
Fonfría, Eva S.
Herrador, Zaida
Navarro, Miriam
Bordehore, Cesar
author_sort García-García, David
collection PubMed
description The number of new daily infections is one of the main parameters to understand the dynamics of an epidemic. During the COVID-19 pandemic in 2020, however, such information has been underestimated. Here, we propose a retrospective methodology to estimate daily infections from daily deaths, because those are usually more accurately documented. Given the incubation period, the time from illness onset to death, and the case fatality ratio, the date of death can be estimated from the date of infection. We apply this idea conversely to estimate infections from deaths. This methodology is applied to Spain and its 19 administrative regions. Our results showed that probable daily infections during the first wave were between 35 and 42 times more than those officially documented on 14 March, when the national government decreed a national lockdown and 9 times more than those documented by the updated version of the official data. The national lockdown had a strong effect on the growth rate of virus transmission, which began to decrease immediately. Finally, the first inferred infection in Spain is about 43 days before the official data were available during the first wave. The current official data show delays of 15–30 days in the first infection relative to the inferred infections in 63% of the regions. In summary, we propose a methodology that allows reinterpretation of official daily infections, improving data accuracy in infection magnitude and dates because it assimilates valuable information from the National Seroprevalence Studies.
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spelling pubmed-81638522021-06-01 Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study García-García, David Vigo, María Isabel Fonfría, Eva S. Herrador, Zaida Navarro, Miriam Bordehore, Cesar Sci Rep Article The number of new daily infections is one of the main parameters to understand the dynamics of an epidemic. During the COVID-19 pandemic in 2020, however, such information has been underestimated. Here, we propose a retrospective methodology to estimate daily infections from daily deaths, because those are usually more accurately documented. Given the incubation period, the time from illness onset to death, and the case fatality ratio, the date of death can be estimated from the date of infection. We apply this idea conversely to estimate infections from deaths. This methodology is applied to Spain and its 19 administrative regions. Our results showed that probable daily infections during the first wave were between 35 and 42 times more than those officially documented on 14 March, when the national government decreed a national lockdown and 9 times more than those documented by the updated version of the official data. The national lockdown had a strong effect on the growth rate of virus transmission, which began to decrease immediately. Finally, the first inferred infection in Spain is about 43 days before the official data were available during the first wave. The current official data show delays of 15–30 days in the first infection relative to the inferred infections in 63% of the regions. In summary, we propose a methodology that allows reinterpretation of official daily infections, improving data accuracy in infection magnitude and dates because it assimilates valuable information from the National Seroprevalence Studies. Nature Publishing Group UK 2021-05-28 /pmc/articles/PMC8163852/ /pubmed/34050198 http://dx.doi.org/10.1038/s41598-021-90051-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
García-García, David
Vigo, María Isabel
Fonfría, Eva S.
Herrador, Zaida
Navarro, Miriam
Bordehore, Cesar
Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study
title Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study
title_full Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study
title_fullStr Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study
title_full_unstemmed Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study
title_short Retrospective methodology to estimate daily infections from deaths (REMEDID) in COVID-19: the Spain case study
title_sort retrospective methodology to estimate daily infections from deaths (remedid) in covid-19: the spain case study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8163852/
https://www.ncbi.nlm.nih.gov/pubmed/34050198
http://dx.doi.org/10.1038/s41598-021-90051-7
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