Cargando…

Optimisation of sample storage and DNA extraction for human gut microbiota studies

BACKGROUND: New developments in next-generation sequencing technologies and massive data received from this approach open wide prospects for personalised medicine and nutrition studies. Metagenomic analysis of the gut microbiota is paramount for the characterization of human health and wellbeing. De...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kazantseva, Jekaterina, Malv, Esther, Kaleda, Aleksei, Kallastu, Aili, Meikas, Anne
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8164492/ https://www.ncbi.nlm.nih.gov/pubmed/34051731 http://dx.doi.org/10.1186/s12866-021-02233-y

Ejemplares similares

Absolute quantification of viable bacteria abundances in food by next-generation sequencing: Quantitative NGS of viable microbes
por: Kallastu, Aili, et al.
Publicado: (2023)

Evaluation of Microbial Dynamics of Kombucha Consortia upon Continuous Backslopping in Coffee and Orange Juice
por: Andreson, Maret, et al.
Publicado: (2023)

Determination of Technological Parameters and Characterization of Microbiota of the Spontaneous Sourdough Fermentation of Hull-Less Barley
por: Reidzane, Sanita, et al.
Publicado: (2021)

Methodology challenges in studying human gut microbiota – effects of collection, storage, DNA extraction and next generation sequencing technologies
por: Panek, Marina, et al.
Publicado: (2018)

Optimising Bacterial DNA Extraction from Faecal Samples: Comparison of Three Methods
por: Smith, Birgitte, et al.
Publicado: (2011)

Diversity in TAF Proteomics: Consequences for Cellular Differentiation and Migration
por: Kazantseva, Jekaterina, et al.
Publicado: (2014)

Toward Best Practice in Livestock Microbiota Research: A Comprehensive Comparison of Sample Storage and DNA Extraction Strategies
por: Wegl, Gertrude, et al.
Publicado: (2021)

Effects of storage time on DNA profiling success from archived latent fingerprint samples using an optimised workflow
por: Menchhoff, Sydney I., et al.
Publicado: (2020)

Optimisation of the DNA dipstick as a rapid extraction method for Schistosoma japonicum in infected mice samples and spiked human clinical samples
por: Aula, Oyime P., et al.
Publicado: (2023)

Alternative Splicing Targeting the hTAF4-TAFH Domain of TAF4 Represses Proliferation and Accelerates Chondrogenic Differentiation of Human Mesenchymal Stem Cells
por: Kazantseva, Jekaterina, et al.
Publicado: (2013)

Optimisation of DNA extraction from the crustacean Daphnia
por: Athanasio, Camila Gonçalves, et al.
Publicado: (2016)

Optimising sampling and analysis protocols in environmental DNA studies
por: Buxton, Andrew, et al.
Publicado: (2021)

The effect of DNA extraction methodology on gut microbiota research applications
por: Gerasimidis, Konstantinos, et al.
Publicado: (2016)

Effects of the long-term storage of human fecal microbiota samples collected in RNAlater
por: Tap, Julien, et al.
Publicado: (2019)

Epidemiological Studies of Children’s Gut Microbiota: Validation of Sample Collection and Storage Methods and Microbiota Analysis of Toddlers’ Feces Collected from Diapers
por: Tamada, Hazuki, et al.
Publicado: (2022)

Filling the gap between collection, transport and storage of the human gut microbiota
por: Martínez, Noelia, et al.
Publicado: (2019)

Targeted alternative splicing of TAF4: a new strategy for cell reprogramming
por: Kazantseva, Jekaterina, et al.
Publicado: (2016)

How to Process Sputum Samples and Extract Bacterial DNA for Microbiota Analysis
por: Terranova, Leonardo, et al.
Publicado: (2018)

Integrity of the Human Faecal Microbiota following Long-Term Sample Storage
por: Kia, Elahe, et al.
Publicado: (2016)

Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants
por: Alcon-Giner, Cristina, et al.
Publicado: (2017)

Combined bacterial and fungal intestinal microbiota analyses: Impact of storage conditions and DNA extraction protocols
por: Angebault, Cécile, et al.
Publicado: (2018)

Water sorption behaviour of commercial furcellaran
por: Eha, Kairit, et al.
Publicado: (2022)

Comparison of four DNA extraction kits efficiency for 16SrDNA microbiota profiling of diverse human samples
por: Gall-David, Sandrine Le, et al.
Publicado: (2023)

Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota
por: Lyons, Katriona E., et al.
Publicado: (2020)

Impact of Ambient Temperature Sample Storage on the Equine Fecal Microbiota
por: Martin de Bustamante, Michelle, et al.
Publicado: (2021)

Bovine milk microbiota: Evaluation of different DNA extraction protocols for challenging samples
por: Schwenker, Julia A., et al.
Publicado: (2022)

Optimisation of Mycobacterium bovis BCG Fermentation and Storage Survival
por: Pascoe, Jordan, et al.
Publicado: (2020)

Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences
por: Wagner Mackenzie, Brett, et al.
Publicado: (2015)

Effect of storage and DNA extraction method on 16S rRNA-profiled fecal microbiota in Japanese adults
por: Kawada, Yuki, et al.
Publicado: (2019)

Graphene-Augmented Nanofiber Scaffolds Trigger Gene Expression Switching of Four Cancer Cell Types
por: Kazantseva, Jekaterina, et al.
Publicado: (2018)

Graphene-augmented nanofiber scaffolds demonstrate new features in cells behaviour
por: Kazantseva, Jekaterina, et al.
Publicado: (2016)

Biomechanical Features of Graphene-Augmented Inorganic Nanofibrous Scaffolds and Their Physical Interaction with Viruses
por: Gasik, Michael, et al.
Publicado: (2020)

Comparison of four DNA extraction methods for 16s rRNA microbiota profiling of human faecal samples
por: Sinclair, James, et al.
Publicado: (2023)

The Effect of Sampling and Storage on the Fecal Microbiota Composition in Healthy and Diseased Subjects
por: Tedjo, Danyta I., et al.
Publicado: (2015)

Decoding gut microbiota by imaging analysis of fecal samples
por: Furusawa, Chikara, et al.
Publicado: (2021)

Sensitivity optimisation of tuberculosis bioaerosol sampling
por: Patterson, Benjamin, et al.
Publicado: (2020)

Efficacy of Fecal Sampling as a Gut Proxy in the Study of Chicken Gut Microbiota
por: Yan, Wei, et al.
Publicado: (2019)

gDNA extraction yield and methylation status of blood samples are affected by long-term storage conditions
por: Schröder, Charlotte, et al.
Publicado: (2018)

Utilizing field collected insects for next generation sequencing: Effects of sampling, storage, and DNA extraction methods
por: Ballare, Kimberly M., et al.
Publicado: (2019)

How to Open the Treasure Chest? Optimising DNA Extraction from Herbarium Specimens
por: Särkinen, Tiina, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_t1p46c04lhkgdh901tiklvb4cl