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A Transfer Learning–Based Active Learning Framework for Brain Tumor Classification

Brain tumor is one of the leading causes of cancer-related death globally among children and adults. Precise classification of brain tumor grade (low-grade and high-grade glioma) at an early stage plays a key role in successful prognosis and treatment planning. With recent advances in deep learning,...

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Autores principales: Hao, Ruqian, Namdar, Khashayar, Liu, Lin, Khalvati, Farzad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8165261/
https://www.ncbi.nlm.nih.gov/pubmed/34079932
http://dx.doi.org/10.3389/frai.2021.635766
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author Hao, Ruqian
Namdar, Khashayar
Liu, Lin
Khalvati, Farzad
author_facet Hao, Ruqian
Namdar, Khashayar
Liu, Lin
Khalvati, Farzad
author_sort Hao, Ruqian
collection PubMed
description Brain tumor is one of the leading causes of cancer-related death globally among children and adults. Precise classification of brain tumor grade (low-grade and high-grade glioma) at an early stage plays a key role in successful prognosis and treatment planning. With recent advances in deep learning, artificial intelligence–enabled brain tumor grading systems can assist radiologists in the interpretation of medical images within seconds. The performance of deep learning techniques is, however, highly depended on the size of the annotated dataset. It is extremely challenging to label a large quantity of medical images, given the complexity and volume of medical data. In this work, we propose a novel transfer learning–based active learning framework to reduce the annotation cost while maintaining stability and robustness of the model performance for brain tumor classification. In this retrospective research, we employed a 2D slice–based approach to train and fine-tune our model on the magnetic resonance imaging (MRI) training dataset of 203 patients and a validation dataset of 66 patients which was used as the baseline. With our proposed method, the model achieved area under receiver operating characteristic (ROC) curve (AUC) of 82.89% on a separate test dataset of 66 patients, which was 2.92% higher than the baseline AUC while saving at least 40% of labeling cost. In order to further examine the robustness of our method, we created a balanced dataset, which underwent the same procedure. The model achieved AUC of 82% compared with AUC of 78.48% for the baseline, which reassures the robustness and stability of our proposed transfer learning augmented with active learning framework while significantly reducing the size of training data.
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spelling pubmed-81652612021-06-01 A Transfer Learning–Based Active Learning Framework for Brain Tumor Classification Hao, Ruqian Namdar, Khashayar Liu, Lin Khalvati, Farzad Front Artif Intell Artificial Intelligence Brain tumor is one of the leading causes of cancer-related death globally among children and adults. Precise classification of brain tumor grade (low-grade and high-grade glioma) at an early stage plays a key role in successful prognosis and treatment planning. With recent advances in deep learning, artificial intelligence–enabled brain tumor grading systems can assist radiologists in the interpretation of medical images within seconds. The performance of deep learning techniques is, however, highly depended on the size of the annotated dataset. It is extremely challenging to label a large quantity of medical images, given the complexity and volume of medical data. In this work, we propose a novel transfer learning–based active learning framework to reduce the annotation cost while maintaining stability and robustness of the model performance for brain tumor classification. In this retrospective research, we employed a 2D slice–based approach to train and fine-tune our model on the magnetic resonance imaging (MRI) training dataset of 203 patients and a validation dataset of 66 patients which was used as the baseline. With our proposed method, the model achieved area under receiver operating characteristic (ROC) curve (AUC) of 82.89% on a separate test dataset of 66 patients, which was 2.92% higher than the baseline AUC while saving at least 40% of labeling cost. In order to further examine the robustness of our method, we created a balanced dataset, which underwent the same procedure. The model achieved AUC of 82% compared with AUC of 78.48% for the baseline, which reassures the robustness and stability of our proposed transfer learning augmented with active learning framework while significantly reducing the size of training data. Frontiers Media S.A. 2021-05-17 /pmc/articles/PMC8165261/ /pubmed/34079932 http://dx.doi.org/10.3389/frai.2021.635766 Text en Copyright © 2021 Hao, Namdar, Liu and Khalvati. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Artificial Intelligence
Hao, Ruqian
Namdar, Khashayar
Liu, Lin
Khalvati, Farzad
A Transfer Learning–Based Active Learning Framework for Brain Tumor Classification
title A Transfer Learning–Based Active Learning Framework for Brain Tumor Classification
title_full A Transfer Learning–Based Active Learning Framework for Brain Tumor Classification
title_fullStr A Transfer Learning–Based Active Learning Framework for Brain Tumor Classification
title_full_unstemmed A Transfer Learning–Based Active Learning Framework for Brain Tumor Classification
title_short A Transfer Learning–Based Active Learning Framework for Brain Tumor Classification
title_sort transfer learning–based active learning framework for brain tumor classification
topic Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8165261/
https://www.ncbi.nlm.nih.gov/pubmed/34079932
http://dx.doi.org/10.3389/frai.2021.635766
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