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RLIM: a recursive and latent infection model for the prediction of US COVID-19 infections and turning points

Initially found in Hubei, Wuhan, and identified as a novel virus of the coronavirus family by the WHO, COVID-19 has spread worldwide at exponential speed, causing millions of deaths and public fear. Currently, the USA, India, Brazil, and other parts of the world are experiencing a secondary wave of...

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Autores principales: Yu, Xiang, Lu, Lihua, Shen, Jianyi, Li, Jiandun, Xiao, Wei, Chen, Yangquan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166369/
https://www.ncbi.nlm.nih.gov/pubmed/34092919
http://dx.doi.org/10.1007/s11071-021-06520-1
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author Yu, Xiang
Lu, Lihua
Shen, Jianyi
Li, Jiandun
Xiao, Wei
Chen, Yangquan
author_facet Yu, Xiang
Lu, Lihua
Shen, Jianyi
Li, Jiandun
Xiao, Wei
Chen, Yangquan
author_sort Yu, Xiang
collection PubMed
description Initially found in Hubei, Wuhan, and identified as a novel virus of the coronavirus family by the WHO, COVID-19 has spread worldwide at exponential speed, causing millions of deaths and public fear. Currently, the USA, India, Brazil, and other parts of the world are experiencing a secondary wave of COVID-19. However, the medical, mathematical, and pharmaceutical aspects of its transmission, incubation, and recovery processes are still unclear. The classical susceptible–infected–recovered model has limitations in describing the dynamic behavior of COVID-19. Hence, it is necessary to introduce a recursive, latent model to predict the number of future COVID-19 infection cases in the USA. In this article, a dynamic recursive and latent infection model (RLIM) based on the classical SEIR model is proposed to predict the number of COVID-19 infections. Given COVID-19 infection and recovery data for a certain period, the RLIM is able to fit current values and produce an optimal set of parameters with a minimum error rate according to actual reported numbers. With these optimal parameters assigned, the RLIM model then becomes able to produce predictions of infection numbers within a certain period. To locate the turning point of COVID-19 transmission, an initial value for the secondary infection rate is given to the RLIM algorithm for calculation. RLIM will then calculate the secondary infection rates of a continuous time series with an iterative search strategy to speed up the convergence of the prediction outcomes and minimize the maximum square errors. Compared with other forecast algorithms, RLIM is able to adapt the COVID-19 infection curve faster and more accurately and, more importantly, provides a way to identify the turning point in virus transmission by searching for the equilibrium between recoveries and new infections. Simulations of four US states show that with the secondary infection rate [Formula: see text] initially set to 0.5 within the selected latent period of 14 days, RLIM is able to minimize this value at 0.07 and reach an equilibrium condition. A successful forecast is generated using New York state’s COVID-19 transmission, in which a turning point is predicted to emerge on January 31, 2021. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11071-021-06520-1.
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spelling pubmed-81663692021-06-01 RLIM: a recursive and latent infection model for the prediction of US COVID-19 infections and turning points Yu, Xiang Lu, Lihua Shen, Jianyi Li, Jiandun Xiao, Wei Chen, Yangquan Nonlinear Dyn Original Paper Initially found in Hubei, Wuhan, and identified as a novel virus of the coronavirus family by the WHO, COVID-19 has spread worldwide at exponential speed, causing millions of deaths and public fear. Currently, the USA, India, Brazil, and other parts of the world are experiencing a secondary wave of COVID-19. However, the medical, mathematical, and pharmaceutical aspects of its transmission, incubation, and recovery processes are still unclear. The classical susceptible–infected–recovered model has limitations in describing the dynamic behavior of COVID-19. Hence, it is necessary to introduce a recursive, latent model to predict the number of future COVID-19 infection cases in the USA. In this article, a dynamic recursive and latent infection model (RLIM) based on the classical SEIR model is proposed to predict the number of COVID-19 infections. Given COVID-19 infection and recovery data for a certain period, the RLIM is able to fit current values and produce an optimal set of parameters with a minimum error rate according to actual reported numbers. With these optimal parameters assigned, the RLIM model then becomes able to produce predictions of infection numbers within a certain period. To locate the turning point of COVID-19 transmission, an initial value for the secondary infection rate is given to the RLIM algorithm for calculation. RLIM will then calculate the secondary infection rates of a continuous time series with an iterative search strategy to speed up the convergence of the prediction outcomes and minimize the maximum square errors. Compared with other forecast algorithms, RLIM is able to adapt the COVID-19 infection curve faster and more accurately and, more importantly, provides a way to identify the turning point in virus transmission by searching for the equilibrium between recoveries and new infections. Simulations of four US states show that with the secondary infection rate [Formula: see text] initially set to 0.5 within the selected latent period of 14 days, RLIM is able to minimize this value at 0.07 and reach an equilibrium condition. A successful forecast is generated using New York state’s COVID-19 transmission, in which a turning point is predicted to emerge on January 31, 2021. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11071-021-06520-1. Springer Netherlands 2021-05-31 2021 /pmc/articles/PMC8166369/ /pubmed/34092919 http://dx.doi.org/10.1007/s11071-021-06520-1 Text en © The Author(s), under exclusive licence to Springer Nature B.V. 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Paper
Yu, Xiang
Lu, Lihua
Shen, Jianyi
Li, Jiandun
Xiao, Wei
Chen, Yangquan
RLIM: a recursive and latent infection model for the prediction of US COVID-19 infections and turning points
title RLIM: a recursive and latent infection model for the prediction of US COVID-19 infections and turning points
title_full RLIM: a recursive and latent infection model for the prediction of US COVID-19 infections and turning points
title_fullStr RLIM: a recursive and latent infection model for the prediction of US COVID-19 infections and turning points
title_full_unstemmed RLIM: a recursive and latent infection model for the prediction of US COVID-19 infections and turning points
title_short RLIM: a recursive and latent infection model for the prediction of US COVID-19 infections and turning points
title_sort rlim: a recursive and latent infection model for the prediction of us covid-19 infections and turning points
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166369/
https://www.ncbi.nlm.nih.gov/pubmed/34092919
http://dx.doi.org/10.1007/s11071-021-06520-1
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