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RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus
Tardigrades are microscopic animals of which terrestrial species are capable of tolerating extreme environments by entering a desiccated ametabolic state known as anhydrobiosis. Intriguingly, they survive high dosage gamma rays (>4,000 Gy), possibly through a mechanism known as cross-tolerance. W...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166744/ https://www.ncbi.nlm.nih.gov/pubmed/34095369 http://dx.doi.org/10.1016/j.dib.2021.107111 |
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author | Yoshida, Yuki Horikawa, Daiki D. Sakashita, Tetsuya Yokota, Yuichiro Kobayashi, Yasuhiko Tomita, Masaru Arakawa, Kazuharu |
author_facet | Yoshida, Yuki Horikawa, Daiki D. Sakashita, Tetsuya Yokota, Yuichiro Kobayashi, Yasuhiko Tomita, Masaru Arakawa, Kazuharu |
author_sort | Yoshida, Yuki |
collection | PubMed |
description | Tardigrades are microscopic animals of which terrestrial species are capable of tolerating extreme environments by entering a desiccated ametabolic state known as anhydrobiosis. Intriguingly, they survive high dosage gamma rays (>4,000 Gy), possibly through a mechanism known as cross-tolerance. We hypothesized that anhydrobiosis genes are also regulated during cross-tolerance, thus we submitted Ramazzottius varieornatus to 500 Gy (60)Co gamma-ray and conducted time-course low-input RNA-Seq. The gene expression was quantified with RSEM and differential expression was determined with DEseq2. Differentially expressed genes were submitted to gene ontology enrichment analysis with GOStat. The transcriptome dynamically shifted nine hours post-exposure. |
format | Online Article Text |
id | pubmed-8166744 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-81667442021-06-05 RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus Yoshida, Yuki Horikawa, Daiki D. Sakashita, Tetsuya Yokota, Yuichiro Kobayashi, Yasuhiko Tomita, Masaru Arakawa, Kazuharu Data Brief Data Article Tardigrades are microscopic animals of which terrestrial species are capable of tolerating extreme environments by entering a desiccated ametabolic state known as anhydrobiosis. Intriguingly, they survive high dosage gamma rays (>4,000 Gy), possibly through a mechanism known as cross-tolerance. We hypothesized that anhydrobiosis genes are also regulated during cross-tolerance, thus we submitted Ramazzottius varieornatus to 500 Gy (60)Co gamma-ray and conducted time-course low-input RNA-Seq. The gene expression was quantified with RSEM and differential expression was determined with DEseq2. Differentially expressed genes were submitted to gene ontology enrichment analysis with GOStat. The transcriptome dynamically shifted nine hours post-exposure. Elsevier 2021-05-09 /pmc/articles/PMC8166744/ /pubmed/34095369 http://dx.doi.org/10.1016/j.dib.2021.107111 Text en © 2021 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Yoshida, Yuki Horikawa, Daiki D. Sakashita, Tetsuya Yokota, Yuichiro Kobayashi, Yasuhiko Tomita, Masaru Arakawa, Kazuharu RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus |
title | RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus |
title_full | RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus |
title_fullStr | RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus |
title_full_unstemmed | RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus |
title_short | RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus |
title_sort | rna sequencing data for gamma radiation response in the extremotolerant tardigrade ramazzottius varieornatus |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166744/ https://www.ncbi.nlm.nih.gov/pubmed/34095369 http://dx.doi.org/10.1016/j.dib.2021.107111 |
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