Cargando…

RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus

Tardigrades are microscopic animals of which terrestrial species are capable of tolerating extreme environments by entering a desiccated ametabolic state known as anhydrobiosis. Intriguingly, they survive high dosage gamma rays (>4,000 Gy), possibly through a mechanism known as cross-tolerance. W...

Descripción completa

Detalles Bibliográficos
Autores principales: Yoshida, Yuki, Horikawa, Daiki D., Sakashita, Tetsuya, Yokota, Yuichiro, Kobayashi, Yasuhiko, Tomita, Masaru, Arakawa, Kazuharu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166744/
https://www.ncbi.nlm.nih.gov/pubmed/34095369
http://dx.doi.org/10.1016/j.dib.2021.107111
_version_ 1783701560312725504
author Yoshida, Yuki
Horikawa, Daiki D.
Sakashita, Tetsuya
Yokota, Yuichiro
Kobayashi, Yasuhiko
Tomita, Masaru
Arakawa, Kazuharu
author_facet Yoshida, Yuki
Horikawa, Daiki D.
Sakashita, Tetsuya
Yokota, Yuichiro
Kobayashi, Yasuhiko
Tomita, Masaru
Arakawa, Kazuharu
author_sort Yoshida, Yuki
collection PubMed
description Tardigrades are microscopic animals of which terrestrial species are capable of tolerating extreme environments by entering a desiccated ametabolic state known as anhydrobiosis. Intriguingly, they survive high dosage gamma rays (>4,000 Gy), possibly through a mechanism known as cross-tolerance. We hypothesized that anhydrobiosis genes are also regulated during cross-tolerance, thus we submitted Ramazzottius varieornatus to 500 Gy (60)Co gamma-ray and conducted time-course low-input RNA-Seq. The gene expression was quantified with RSEM and differential expression was determined with DEseq2. Differentially expressed genes were submitted to gene ontology enrichment analysis with GOStat. The transcriptome dynamically shifted nine hours post-exposure.
format Online
Article
Text
id pubmed-8166744
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-81667442021-06-05 RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus Yoshida, Yuki Horikawa, Daiki D. Sakashita, Tetsuya Yokota, Yuichiro Kobayashi, Yasuhiko Tomita, Masaru Arakawa, Kazuharu Data Brief Data Article Tardigrades are microscopic animals of which terrestrial species are capable of tolerating extreme environments by entering a desiccated ametabolic state known as anhydrobiosis. Intriguingly, they survive high dosage gamma rays (>4,000 Gy), possibly through a mechanism known as cross-tolerance. We hypothesized that anhydrobiosis genes are also regulated during cross-tolerance, thus we submitted Ramazzottius varieornatus to 500 Gy (60)Co gamma-ray and conducted time-course low-input RNA-Seq. The gene expression was quantified with RSEM and differential expression was determined with DEseq2. Differentially expressed genes were submitted to gene ontology enrichment analysis with GOStat. The transcriptome dynamically shifted nine hours post-exposure. Elsevier 2021-05-09 /pmc/articles/PMC8166744/ /pubmed/34095369 http://dx.doi.org/10.1016/j.dib.2021.107111 Text en © 2021 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Yoshida, Yuki
Horikawa, Daiki D.
Sakashita, Tetsuya
Yokota, Yuichiro
Kobayashi, Yasuhiko
Tomita, Masaru
Arakawa, Kazuharu
RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus
title RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus
title_full RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus
title_fullStr RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus
title_full_unstemmed RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus
title_short RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus
title_sort rna sequencing data for gamma radiation response in the extremotolerant tardigrade ramazzottius varieornatus
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166744/
https://www.ncbi.nlm.nih.gov/pubmed/34095369
http://dx.doi.org/10.1016/j.dib.2021.107111
work_keys_str_mv AT yoshidayuki rnasequencingdataforgammaradiationresponseintheextremotoleranttardigraderamazzottiusvarieornatus
AT horikawadaikid rnasequencingdataforgammaradiationresponseintheextremotoleranttardigraderamazzottiusvarieornatus
AT sakashitatetsuya rnasequencingdataforgammaradiationresponseintheextremotoleranttardigraderamazzottiusvarieornatus
AT yokotayuichiro rnasequencingdataforgammaradiationresponseintheextremotoleranttardigraderamazzottiusvarieornatus
AT kobayashiyasuhiko rnasequencingdataforgammaradiationresponseintheextremotoleranttardigraderamazzottiusvarieornatus
AT tomitamasaru rnasequencingdataforgammaradiationresponseintheextremotoleranttardigraderamazzottiusvarieornatus
AT arakawakazuharu rnasequencingdataforgammaradiationresponseintheextremotoleranttardigraderamazzottiusvarieornatus