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Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
The chromosome-centric dataset was created by applying several technologies of transcriptome profiling. The described dataset is available at NCBI repository (BioProject ID PRJNA635536). The dataset referred to the same type of tissue, cell lines, transcriptome sequencing technologies, and was accom...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166769/ https://www.ncbi.nlm.nih.gov/pubmed/34095379 http://dx.doi.org/10.1016/j.dib.2021.107130 |
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author | Krasnov, George Shkrigunov, Timur Radko, Sergey Ptitsyn, Konstantin Shapovalova, Valeriya Timoshenko, Olga Khmeleva, Svetlana Kurbatov, Leonid Kiseleva, Yana Ilgisonis, Ekaterina Kiseleva, Olga Vakhrushev, Igor Tsvetkova, Anastasia Buromski, Ivan Markin, Sergey Archakov, Alexander Lisitsa, Andrey Ponomarenko, Elena |
author_facet | Krasnov, George Shkrigunov, Timur Radko, Sergey Ptitsyn, Konstantin Shapovalova, Valeriya Timoshenko, Olga Khmeleva, Svetlana Kurbatov, Leonid Kiseleva, Yana Ilgisonis, Ekaterina Kiseleva, Olga Vakhrushev, Igor Tsvetkova, Anastasia Buromski, Ivan Markin, Sergey Archakov, Alexander Lisitsa, Andrey Ponomarenko, Elena |
author_sort | Krasnov, George |
collection | PubMed |
description | The chromosome-centric dataset was created by applying several technologies of transcriptome profiling. The described dataset is available at NCBI repository (BioProject ID PRJNA635536). The dataset referred to the same type of tissue, cell lines, transcriptome sequencing technologies, and was accomplished in a period of 8 years (the first data were obtained in 2013 while the last ones — in 2020). The high-throughput sequencing technologies were employed along with the quantitative PCR (qPCR) approach, for data generation using the gene expression level assessment. qPCR was performed for a limited group of genes, encoded on human chromosome 18, for the Russian part of the Chromosome-Centric Human Proteome Project. The data of high-throughput sequencing are provided as Excel spreadsheets, where the data on FPKM and TMP values were evaluated for the whole transcriptome with both Illumina HiSeq and Oxford Nanopore Technologies MinION sequencing. |
format | Online Article Text |
id | pubmed-8166769 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-81667692021-06-05 Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data Krasnov, George Shkrigunov, Timur Radko, Sergey Ptitsyn, Konstantin Shapovalova, Valeriya Timoshenko, Olga Khmeleva, Svetlana Kurbatov, Leonid Kiseleva, Yana Ilgisonis, Ekaterina Kiseleva, Olga Vakhrushev, Igor Tsvetkova, Anastasia Buromski, Ivan Markin, Sergey Archakov, Alexander Lisitsa, Andrey Ponomarenko, Elena Data Brief Data Article The chromosome-centric dataset was created by applying several technologies of transcriptome profiling. The described dataset is available at NCBI repository (BioProject ID PRJNA635536). The dataset referred to the same type of tissue, cell lines, transcriptome sequencing technologies, and was accomplished in a period of 8 years (the first data were obtained in 2013 while the last ones — in 2020). The high-throughput sequencing technologies were employed along with the quantitative PCR (qPCR) approach, for data generation using the gene expression level assessment. qPCR was performed for a limited group of genes, encoded on human chromosome 18, for the Russian part of the Chromosome-Centric Human Proteome Project. The data of high-throughput sequencing are provided as Excel spreadsheets, where the data on FPKM and TMP values were evaluated for the whole transcriptome with both Illumina HiSeq and Oxford Nanopore Technologies MinION sequencing. Elsevier 2021-05-12 /pmc/articles/PMC8166769/ /pubmed/34095379 http://dx.doi.org/10.1016/j.dib.2021.107130 Text en © 2021 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Krasnov, George Shkrigunov, Timur Radko, Sergey Ptitsyn, Konstantin Shapovalova, Valeriya Timoshenko, Olga Khmeleva, Svetlana Kurbatov, Leonid Kiseleva, Yana Ilgisonis, Ekaterina Kiseleva, Olga Vakhrushev, Igor Tsvetkova, Anastasia Buromski, Ivan Markin, Sergey Archakov, Alexander Lisitsa, Andrey Ponomarenko, Elena Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data |
title | Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data |
title_full | Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data |
title_fullStr | Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data |
title_full_unstemmed | Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data |
title_short | Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data |
title_sort | human chr18 transcriptome dataset combined from the illumina hiseq, ont minion, and qpcr data |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166769/ https://www.ncbi.nlm.nih.gov/pubmed/34095379 http://dx.doi.org/10.1016/j.dib.2021.107130 |
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