Cargando…

Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data

The chromosome-centric dataset was created by applying several technologies of transcriptome profiling. The described dataset is available at NCBI repository (BioProject ID PRJNA635536). The dataset referred to the same type of tissue, cell lines, transcriptome sequencing technologies, and was accom...

Descripción completa

Detalles Bibliográficos
Autores principales: Krasnov, George, Shkrigunov, Timur, Radko, Sergey, Ptitsyn, Konstantin, Shapovalova, Valeriya, Timoshenko, Olga, Khmeleva, Svetlana, Kurbatov, Leonid, Kiseleva, Yana, Ilgisonis, Ekaterina, Kiseleva, Olga, Vakhrushev, Igor, Tsvetkova, Anastasia, Buromski, Ivan, Markin, Sergey, Archakov, Alexander, Lisitsa, Andrey, Ponomarenko, Elena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166769/
https://www.ncbi.nlm.nih.gov/pubmed/34095379
http://dx.doi.org/10.1016/j.dib.2021.107130
_version_ 1783701566303240192
author Krasnov, George
Shkrigunov, Timur
Radko, Sergey
Ptitsyn, Konstantin
Shapovalova, Valeriya
Timoshenko, Olga
Khmeleva, Svetlana
Kurbatov, Leonid
Kiseleva, Yana
Ilgisonis, Ekaterina
Kiseleva, Olga
Vakhrushev, Igor
Tsvetkova, Anastasia
Buromski, Ivan
Markin, Sergey
Archakov, Alexander
Lisitsa, Andrey
Ponomarenko, Elena
author_facet Krasnov, George
Shkrigunov, Timur
Radko, Sergey
Ptitsyn, Konstantin
Shapovalova, Valeriya
Timoshenko, Olga
Khmeleva, Svetlana
Kurbatov, Leonid
Kiseleva, Yana
Ilgisonis, Ekaterina
Kiseleva, Olga
Vakhrushev, Igor
Tsvetkova, Anastasia
Buromski, Ivan
Markin, Sergey
Archakov, Alexander
Lisitsa, Andrey
Ponomarenko, Elena
author_sort Krasnov, George
collection PubMed
description The chromosome-centric dataset was created by applying several technologies of transcriptome profiling. The described dataset is available at NCBI repository (BioProject ID PRJNA635536). The dataset referred to the same type of tissue, cell lines, transcriptome sequencing technologies, and was accomplished in a period of 8 years (the first data were obtained in 2013 while the last ones — in 2020). The high-throughput sequencing technologies were employed along with the quantitative PCR (qPCR) approach, for data generation using the gene expression level assessment. qPCR was performed for a limited group of genes, encoded on human chromosome 18, for the Russian part of the Chromosome-Centric Human Proteome Project. The data of high-throughput sequencing are provided as Excel spreadsheets, where the data on FPKM and TMP values were evaluated for the whole transcriptome with both Illumina HiSeq and Oxford Nanopore Technologies MinION sequencing.
format Online
Article
Text
id pubmed-8166769
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-81667692021-06-05 Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data Krasnov, George Shkrigunov, Timur Radko, Sergey Ptitsyn, Konstantin Shapovalova, Valeriya Timoshenko, Olga Khmeleva, Svetlana Kurbatov, Leonid Kiseleva, Yana Ilgisonis, Ekaterina Kiseleva, Olga Vakhrushev, Igor Tsvetkova, Anastasia Buromski, Ivan Markin, Sergey Archakov, Alexander Lisitsa, Andrey Ponomarenko, Elena Data Brief Data Article The chromosome-centric dataset was created by applying several technologies of transcriptome profiling. The described dataset is available at NCBI repository (BioProject ID PRJNA635536). The dataset referred to the same type of tissue, cell lines, transcriptome sequencing technologies, and was accomplished in a period of 8 years (the first data were obtained in 2013 while the last ones — in 2020). The high-throughput sequencing technologies were employed along with the quantitative PCR (qPCR) approach, for data generation using the gene expression level assessment. qPCR was performed for a limited group of genes, encoded on human chromosome 18, for the Russian part of the Chromosome-Centric Human Proteome Project. The data of high-throughput sequencing are provided as Excel spreadsheets, where the data on FPKM and TMP values were evaluated for the whole transcriptome with both Illumina HiSeq and Oxford Nanopore Technologies MinION sequencing. Elsevier 2021-05-12 /pmc/articles/PMC8166769/ /pubmed/34095379 http://dx.doi.org/10.1016/j.dib.2021.107130 Text en © 2021 The Author(s). Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Krasnov, George
Shkrigunov, Timur
Radko, Sergey
Ptitsyn, Konstantin
Shapovalova, Valeriya
Timoshenko, Olga
Khmeleva, Svetlana
Kurbatov, Leonid
Kiseleva, Yana
Ilgisonis, Ekaterina
Kiseleva, Olga
Vakhrushev, Igor
Tsvetkova, Anastasia
Buromski, Ivan
Markin, Sergey
Archakov, Alexander
Lisitsa, Andrey
Ponomarenko, Elena
Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
title Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
title_full Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
title_fullStr Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
title_full_unstemmed Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
title_short Human Chr18 transcriptome dataset combined from the Illumina HiSeq, ONT MinION, and qPCR data
title_sort human chr18 transcriptome dataset combined from the illumina hiseq, ont minion, and qpcr data
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8166769/
https://www.ncbi.nlm.nih.gov/pubmed/34095379
http://dx.doi.org/10.1016/j.dib.2021.107130
work_keys_str_mv AT krasnovgeorge humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT shkrigunovtimur humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT radkosergey humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT ptitsynkonstantin humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT shapovalovavaleriya humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT timoshenkoolga humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT khmelevasvetlana humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT kurbatovleonid humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT kiselevayana humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT ilgisonisekaterina humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT kiselevaolga humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT vakhrushevigor humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT tsvetkovaanastasia humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT buromskiivan humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT markinsergey humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT archakovalexander humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT lisitsaandrey humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata
AT ponomarenkoelena humanchr18transcriptomedatasetcombinedfromtheilluminahiseqontminionandqpcrdata