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De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis
DNA is packaged with histones to form chromatin that impinges on all nuclear processes, including transcription, replication and repair, in the eukaryotic nucleus. A complete understanding of these molecular processes requires analysis of chromatin context in vitro. Here, Drosophila four core histon...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8167859/ https://www.ncbi.nlm.nih.gov/pubmed/33960726 http://dx.doi.org/10.1002/2211-5463.13178 |
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author | Endo, Yaeta Takemori, Nobuaki Nagy, Szilvia K. Okimune, Kei‐ichi Kamakaka, Rohinton Onouchi, Hitoshi Takasuka, Taichi E. |
author_facet | Endo, Yaeta Takemori, Nobuaki Nagy, Szilvia K. Okimune, Kei‐ichi Kamakaka, Rohinton Onouchi, Hitoshi Takasuka, Taichi E. |
author_sort | Endo, Yaeta |
collection | PubMed |
description | DNA is packaged with histones to form chromatin that impinges on all nuclear processes, including transcription, replication and repair, in the eukaryotic nucleus. A complete understanding of these molecular processes requires analysis of chromatin context in vitro. Here, Drosophila four core histones were produced in a native and unmodified form using wheat germ cell‐free protein synthesis. In the assembly reaction, four unpurified core histones and three chromatin assembly factors (dNAP‐1, dAcf1 and dISWI) were incubated with template DNA. We then assessed stoichiometry with the histones, nucleosome arrays, supercoiling and the ability of the chromatin to serve as a substrate for histone‐modifying enzymes. Overall, our method provides a new avenue to produce chromatin that can be useful in a wide range of chromatin research. |
format | Online Article Text |
id | pubmed-8167859 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81678592021-06-05 De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis Endo, Yaeta Takemori, Nobuaki Nagy, Szilvia K. Okimune, Kei‐ichi Kamakaka, Rohinton Onouchi, Hitoshi Takasuka, Taichi E. FEBS Open Bio Methods DNA is packaged with histones to form chromatin that impinges on all nuclear processes, including transcription, replication and repair, in the eukaryotic nucleus. A complete understanding of these molecular processes requires analysis of chromatin context in vitro. Here, Drosophila four core histones were produced in a native and unmodified form using wheat germ cell‐free protein synthesis. In the assembly reaction, four unpurified core histones and three chromatin assembly factors (dNAP‐1, dAcf1 and dISWI) were incubated with template DNA. We then assessed stoichiometry with the histones, nucleosome arrays, supercoiling and the ability of the chromatin to serve as a substrate for histone‐modifying enzymes. Overall, our method provides a new avenue to produce chromatin that can be useful in a wide range of chromatin research. John Wiley and Sons Inc. 2021-05-16 /pmc/articles/PMC8167859/ /pubmed/33960726 http://dx.doi.org/10.1002/2211-5463.13178 Text en © 2021 The Authors. FEBS Open Bio published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Methods Endo, Yaeta Takemori, Nobuaki Nagy, Szilvia K. Okimune, Kei‐ichi Kamakaka, Rohinton Onouchi, Hitoshi Takasuka, Taichi E. De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis |
title |
De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis |
title_full |
De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis |
title_fullStr |
De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis |
title_full_unstemmed |
De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis |
title_short |
De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis |
title_sort | de novo reconstitution of chromatin using wheat germ cell‐free protein synthesis |
topic | Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8167859/ https://www.ncbi.nlm.nih.gov/pubmed/33960726 http://dx.doi.org/10.1002/2211-5463.13178 |
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