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De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis

DNA is packaged with histones to form chromatin that impinges on all nuclear processes, including transcription, replication and repair, in the eukaryotic nucleus. A complete understanding of these molecular processes requires analysis of chromatin context in vitro. Here, Drosophila four core histon...

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Autores principales: Endo, Yaeta, Takemori, Nobuaki, Nagy, Szilvia K., Okimune, Kei‐ichi, Kamakaka, Rohinton, Onouchi, Hitoshi, Takasuka, Taichi E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8167859/
https://www.ncbi.nlm.nih.gov/pubmed/33960726
http://dx.doi.org/10.1002/2211-5463.13178
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author Endo, Yaeta
Takemori, Nobuaki
Nagy, Szilvia K.
Okimune, Kei‐ichi
Kamakaka, Rohinton
Onouchi, Hitoshi
Takasuka, Taichi E.
author_facet Endo, Yaeta
Takemori, Nobuaki
Nagy, Szilvia K.
Okimune, Kei‐ichi
Kamakaka, Rohinton
Onouchi, Hitoshi
Takasuka, Taichi E.
author_sort Endo, Yaeta
collection PubMed
description DNA is packaged with histones to form chromatin that impinges on all nuclear processes, including transcription, replication and repair, in the eukaryotic nucleus. A complete understanding of these molecular processes requires analysis of chromatin context in vitro. Here, Drosophila four core histones were produced in a native and unmodified form using wheat germ cell‐free protein synthesis. In the assembly reaction, four unpurified core histones and three chromatin assembly factors (dNAP‐1, dAcf1 and dISWI) were incubated with template DNA. We then assessed stoichiometry with the histones, nucleosome arrays, supercoiling and the ability of the chromatin to serve as a substrate for histone‐modifying enzymes. Overall, our method provides a new avenue to produce chromatin that can be useful in a wide range of chromatin research.
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spelling pubmed-81678592021-06-05 De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis Endo, Yaeta Takemori, Nobuaki Nagy, Szilvia K. Okimune, Kei‐ichi Kamakaka, Rohinton Onouchi, Hitoshi Takasuka, Taichi E. FEBS Open Bio Methods DNA is packaged with histones to form chromatin that impinges on all nuclear processes, including transcription, replication and repair, in the eukaryotic nucleus. A complete understanding of these molecular processes requires analysis of chromatin context in vitro. Here, Drosophila four core histones were produced in a native and unmodified form using wheat germ cell‐free protein synthesis. In the assembly reaction, four unpurified core histones and three chromatin assembly factors (dNAP‐1, dAcf1 and dISWI) were incubated with template DNA. We then assessed stoichiometry with the histones, nucleosome arrays, supercoiling and the ability of the chromatin to serve as a substrate for histone‐modifying enzymes. Overall, our method provides a new avenue to produce chromatin that can be useful in a wide range of chromatin research. John Wiley and Sons Inc. 2021-05-16 /pmc/articles/PMC8167859/ /pubmed/33960726 http://dx.doi.org/10.1002/2211-5463.13178 Text en © 2021 The Authors. FEBS Open Bio published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methods
Endo, Yaeta
Takemori, Nobuaki
Nagy, Szilvia K.
Okimune, Kei‐ichi
Kamakaka, Rohinton
Onouchi, Hitoshi
Takasuka, Taichi E.
De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis
title De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis
title_full De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis
title_fullStr De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis
title_full_unstemmed De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis
title_short De novo reconstitution of chromatin using wheat germ cell‐free protein synthesis
title_sort de novo reconstitution of chromatin using wheat germ cell‐free protein synthesis
topic Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8167859/
https://www.ncbi.nlm.nih.gov/pubmed/33960726
http://dx.doi.org/10.1002/2211-5463.13178
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