Cargando…

A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma

Ovarian cancer (OV) is a common type of carcinoma in females. Many studies have reported that ferroptosis is associated with the prognosis of OV patients. However, the mechanism by which this occurs is not well understood. We utilized Genotype-Tissue Expression (GTEx) and The Cancer Genome Atlas (TC...

Descripción completa

Detalles Bibliográficos
Autores principales: Yu, Zhixiang, He, Haiyan, Chen, Yanan, Ji, Qiuhe, Sun, Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8169824/
https://www.ncbi.nlm.nih.gov/pubmed/34075060
http://dx.doi.org/10.1038/s41598-021-90126-5
_version_ 1783702106873528320
author Yu, Zhixiang
He, Haiyan
Chen, Yanan
Ji, Qiuhe
Sun, Min
author_facet Yu, Zhixiang
He, Haiyan
Chen, Yanan
Ji, Qiuhe
Sun, Min
author_sort Yu, Zhixiang
collection PubMed
description Ovarian cancer (OV) is a common type of carcinoma in females. Many studies have reported that ferroptosis is associated with the prognosis of OV patients. However, the mechanism by which this occurs is not well understood. We utilized Genotype-Tissue Expression (GTEx) and The Cancer Genome Atlas (TCGA) to identify ferroptosis-related genes in OV. In the present study, we applied Cox regression analysis to select hub genes and used the least absolute shrinkage and selection operator to construct a prognosis prediction model with mRNA expression profiles and clinical data from TCGA. A series of analyses for this signature was performed in TCGA. We then verified the identified signature using International Cancer Genome Consortium (ICGC) data. After a series of analyses, we identified six hub genes (DNAJB6, RB1, VIMP/ SELENOS, STEAP3, BACH1, and ALOX12) that were then used to construct a model using a training data set. The model was then tested using a validation data set and was found to have high sensitivity and specificity. The identified ferroptosis-related hub genes might play a critical role in the mechanism of OV development. The gene signature we identified may be useful for future clinical applications.
format Online
Article
Text
id pubmed-8169824
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-81698242021-06-02 A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma Yu, Zhixiang He, Haiyan Chen, Yanan Ji, Qiuhe Sun, Min Sci Rep Article Ovarian cancer (OV) is a common type of carcinoma in females. Many studies have reported that ferroptosis is associated with the prognosis of OV patients. However, the mechanism by which this occurs is not well understood. We utilized Genotype-Tissue Expression (GTEx) and The Cancer Genome Atlas (TCGA) to identify ferroptosis-related genes in OV. In the present study, we applied Cox regression analysis to select hub genes and used the least absolute shrinkage and selection operator to construct a prognosis prediction model with mRNA expression profiles and clinical data from TCGA. A series of analyses for this signature was performed in TCGA. We then verified the identified signature using International Cancer Genome Consortium (ICGC) data. After a series of analyses, we identified six hub genes (DNAJB6, RB1, VIMP/ SELENOS, STEAP3, BACH1, and ALOX12) that were then used to construct a model using a training data set. The model was then tested using a validation data set and was found to have high sensitivity and specificity. The identified ferroptosis-related hub genes might play a critical role in the mechanism of OV development. The gene signature we identified may be useful for future clinical applications. Nature Publishing Group UK 2021-06-01 /pmc/articles/PMC8169824/ /pubmed/34075060 http://dx.doi.org/10.1038/s41598-021-90126-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yu, Zhixiang
He, Haiyan
Chen, Yanan
Ji, Qiuhe
Sun, Min
A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma
title A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma
title_full A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma
title_fullStr A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma
title_full_unstemmed A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma
title_short A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma
title_sort novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8169824/
https://www.ncbi.nlm.nih.gov/pubmed/34075060
http://dx.doi.org/10.1038/s41598-021-90126-5
work_keys_str_mv AT yuzhixiang anovelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma
AT hehaiyan anovelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma
AT chenyanan anovelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma
AT jiqiuhe anovelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma
AT sunmin anovelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma
AT yuzhixiang novelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma
AT hehaiyan novelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma
AT chenyanan novelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma
AT jiqiuhe novelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma
AT sunmin novelferroptosisrelatedgenesignatureisassociatedwithprognosisinpatientswithovarianserouscystadenocarcinoma