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A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma
Ovarian cancer (OV) is a common type of carcinoma in females. Many studies have reported that ferroptosis is associated with the prognosis of OV patients. However, the mechanism by which this occurs is not well understood. We utilized Genotype-Tissue Expression (GTEx) and The Cancer Genome Atlas (TC...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8169824/ https://www.ncbi.nlm.nih.gov/pubmed/34075060 http://dx.doi.org/10.1038/s41598-021-90126-5 |
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author | Yu, Zhixiang He, Haiyan Chen, Yanan Ji, Qiuhe Sun, Min |
author_facet | Yu, Zhixiang He, Haiyan Chen, Yanan Ji, Qiuhe Sun, Min |
author_sort | Yu, Zhixiang |
collection | PubMed |
description | Ovarian cancer (OV) is a common type of carcinoma in females. Many studies have reported that ferroptosis is associated with the prognosis of OV patients. However, the mechanism by which this occurs is not well understood. We utilized Genotype-Tissue Expression (GTEx) and The Cancer Genome Atlas (TCGA) to identify ferroptosis-related genes in OV. In the present study, we applied Cox regression analysis to select hub genes and used the least absolute shrinkage and selection operator to construct a prognosis prediction model with mRNA expression profiles and clinical data from TCGA. A series of analyses for this signature was performed in TCGA. We then verified the identified signature using International Cancer Genome Consortium (ICGC) data. After a series of analyses, we identified six hub genes (DNAJB6, RB1, VIMP/ SELENOS, STEAP3, BACH1, and ALOX12) that were then used to construct a model using a training data set. The model was then tested using a validation data set and was found to have high sensitivity and specificity. The identified ferroptosis-related hub genes might play a critical role in the mechanism of OV development. The gene signature we identified may be useful for future clinical applications. |
format | Online Article Text |
id | pubmed-8169824 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-81698242021-06-02 A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma Yu, Zhixiang He, Haiyan Chen, Yanan Ji, Qiuhe Sun, Min Sci Rep Article Ovarian cancer (OV) is a common type of carcinoma in females. Many studies have reported that ferroptosis is associated with the prognosis of OV patients. However, the mechanism by which this occurs is not well understood. We utilized Genotype-Tissue Expression (GTEx) and The Cancer Genome Atlas (TCGA) to identify ferroptosis-related genes in OV. In the present study, we applied Cox regression analysis to select hub genes and used the least absolute shrinkage and selection operator to construct a prognosis prediction model with mRNA expression profiles and clinical data from TCGA. A series of analyses for this signature was performed in TCGA. We then verified the identified signature using International Cancer Genome Consortium (ICGC) data. After a series of analyses, we identified six hub genes (DNAJB6, RB1, VIMP/ SELENOS, STEAP3, BACH1, and ALOX12) that were then used to construct a model using a training data set. The model was then tested using a validation data set and was found to have high sensitivity and specificity. The identified ferroptosis-related hub genes might play a critical role in the mechanism of OV development. The gene signature we identified may be useful for future clinical applications. Nature Publishing Group UK 2021-06-01 /pmc/articles/PMC8169824/ /pubmed/34075060 http://dx.doi.org/10.1038/s41598-021-90126-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Yu, Zhixiang He, Haiyan Chen, Yanan Ji, Qiuhe Sun, Min A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma |
title | A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma |
title_full | A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma |
title_fullStr | A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma |
title_full_unstemmed | A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma |
title_short | A novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma |
title_sort | novel ferroptosis related gene signature is associated with prognosis in patients with ovarian serous cystadenocarcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8169824/ https://www.ncbi.nlm.nih.gov/pubmed/34075060 http://dx.doi.org/10.1038/s41598-021-90126-5 |
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