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Accurate Tumor Segmentation via Octave Convolution Neural Network

Three-dimensional (3D) liver tumor segmentation from Computed Tomography (CT) images is a prerequisite for computer-aided diagnosis, treatment planning, and monitoring of liver cancer. Despite many years of research, 3D liver tumor segmentation remains a challenging task. In this paper, we propose a...

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Autores principales: Wang, Bo, Yang, Jingyi, Ai, Jingyang, Luo, Nana, An, Lihua, Feng, Haixia, Yang, Bo, You, Zheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8169966/
https://www.ncbi.nlm.nih.gov/pubmed/34095168
http://dx.doi.org/10.3389/fmed.2021.653913
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author Wang, Bo
Yang, Jingyi
Ai, Jingyang
Luo, Nana
An, Lihua
Feng, Haixia
Yang, Bo
You, Zheng
author_facet Wang, Bo
Yang, Jingyi
Ai, Jingyang
Luo, Nana
An, Lihua
Feng, Haixia
Yang, Bo
You, Zheng
author_sort Wang, Bo
collection PubMed
description Three-dimensional (3D) liver tumor segmentation from Computed Tomography (CT) images is a prerequisite for computer-aided diagnosis, treatment planning, and monitoring of liver cancer. Despite many years of research, 3D liver tumor segmentation remains a challenging task. In this paper, we propose an effective and efficient method for tumor segmentation in liver CT images using encoder-decoder based octave convolution networks. Compared with other convolution networks utilizing standard convolution for feature extraction, the proposed method utilizes octave convolutions for learning multiple-spatial-frequency features, thus can better capture tumors with varying sizes and shapes. The proposed network takes advantage of a fully convolutional architecture which performs efficient end-to-end learning and inference. More importantly, we introduce a deep supervision mechanism during the learning process to combat potential optimization difficulties, and thus the model can acquire a much faster convergence rate and more powerful discrimination capability. Finally, we integrate octave convolutions into the encoder-decoder architecture of UNet, which can generate high resolution tumor segmentation in one single forward feeding without post-processing steps. Both architectures are trained on a subset of the LiTS (Liver Tumor Segmentation) Challenge. The proposed approach is shown to significantly outperform other networks in terms of various accuracy measures and processing speed.
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spelling pubmed-81699662021-06-03 Accurate Tumor Segmentation via Octave Convolution Neural Network Wang, Bo Yang, Jingyi Ai, Jingyang Luo, Nana An, Lihua Feng, Haixia Yang, Bo You, Zheng Front Med (Lausanne) Medicine Three-dimensional (3D) liver tumor segmentation from Computed Tomography (CT) images is a prerequisite for computer-aided diagnosis, treatment planning, and monitoring of liver cancer. Despite many years of research, 3D liver tumor segmentation remains a challenging task. In this paper, we propose an effective and efficient method for tumor segmentation in liver CT images using encoder-decoder based octave convolution networks. Compared with other convolution networks utilizing standard convolution for feature extraction, the proposed method utilizes octave convolutions for learning multiple-spatial-frequency features, thus can better capture tumors with varying sizes and shapes. The proposed network takes advantage of a fully convolutional architecture which performs efficient end-to-end learning and inference. More importantly, we introduce a deep supervision mechanism during the learning process to combat potential optimization difficulties, and thus the model can acquire a much faster convergence rate and more powerful discrimination capability. Finally, we integrate octave convolutions into the encoder-decoder architecture of UNet, which can generate high resolution tumor segmentation in one single forward feeding without post-processing steps. Both architectures are trained on a subset of the LiTS (Liver Tumor Segmentation) Challenge. The proposed approach is shown to significantly outperform other networks in terms of various accuracy measures and processing speed. Frontiers Media S.A. 2021-05-19 /pmc/articles/PMC8169966/ /pubmed/34095168 http://dx.doi.org/10.3389/fmed.2021.653913 Text en Copyright © 2021 Wang, Yang, Ai, Luo, An, Feng, Yang and You. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Wang, Bo
Yang, Jingyi
Ai, Jingyang
Luo, Nana
An, Lihua
Feng, Haixia
Yang, Bo
You, Zheng
Accurate Tumor Segmentation via Octave Convolution Neural Network
title Accurate Tumor Segmentation via Octave Convolution Neural Network
title_full Accurate Tumor Segmentation via Octave Convolution Neural Network
title_fullStr Accurate Tumor Segmentation via Octave Convolution Neural Network
title_full_unstemmed Accurate Tumor Segmentation via Octave Convolution Neural Network
title_short Accurate Tumor Segmentation via Octave Convolution Neural Network
title_sort accurate tumor segmentation via octave convolution neural network
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8169966/
https://www.ncbi.nlm.nih.gov/pubmed/34095168
http://dx.doi.org/10.3389/fmed.2021.653913
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