Cargando…
A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma
Recent studies have demonstrated that long non-coding RNAs (lncRNAs) are implicated in the regulation of tumor cell ferroptosis. However, the prognostic value of ferroptosis-related lncRNAs has never been comprehensively explored in glioma. In this study, the transcriptomic data and clinical informa...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8170051/ https://www.ncbi.nlm.nih.gov/pubmed/34095147 http://dx.doi.org/10.3389/fcell.2021.675555 |
_version_ | 1783702154647699456 |
---|---|
author | Zheng, Jianglin Zhou, Zijie Qiu, Yue Wang, Minjie Yu, Hao Wu, Zhipeng Wang, Xuan Jiang, Xiaobing |
author_facet | Zheng, Jianglin Zhou, Zijie Qiu, Yue Wang, Minjie Yu, Hao Wu, Zhipeng Wang, Xuan Jiang, Xiaobing |
author_sort | Zheng, Jianglin |
collection | PubMed |
description | Recent studies have demonstrated that long non-coding RNAs (lncRNAs) are implicated in the regulation of tumor cell ferroptosis. However, the prognostic value of ferroptosis-related lncRNAs has never been comprehensively explored in glioma. In this study, the transcriptomic data and clinical information of glioma patients were downloaded from TCGA, CGGA and Rembrandt databases. We identified 24 prognostic ferroptosis-related lncRNAs, 15 of which (SNAI3-AS1, GDNF-AS1, WDFY3-AS2, CPB2-AS1, WAC-AS1, SLC25A21-AS1, ARHGEF26-AS1, LINC00641, LINC00844, MIR155HG, MIR22HG, PVT1, SNHG18, PAXIP1-AS2, and SBF2-AS1) were used to construct a ferroptosis-related lncRNAs signature (FRLS) according to the least absolute shrinkage and selection operator (LASSO) regression. The validity of this FRLS was verified in training (TCGA) and validation (CGGA and Rembrandt) cohorts, respectively. The Kaplan-Meier curves revealed a significant distinction of overall survival (OS) between the high- and low-risk groups. The receiver operating characteristic (ROC) curves exhibited robust prognostic capacity of this FRLS. A nomogram with improved accuracy for predicting OS was established based on independent prognostic factors (FRLS, age, and WHO grade). Besides, patients in the high-risk group had higher immune, stroma, and ESTIMATE scores, lower tumor purity, higher infiltration of immunosuppressive cells, and higher expression of immune checkpoints. Patients in the low-risk group benefited significantly from radiotherapy, while no survival benefit of radiotherapy was observed for those in the high-risk group. In conclusion, we identified the prognostic ferroptosis-related lncRNAs in glioma, and constructed a prognostic signature which was associated with the immune landscape of glioma microenvironment and radiotherapy response. |
format | Online Article Text |
id | pubmed-8170051 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81700512021-06-03 A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma Zheng, Jianglin Zhou, Zijie Qiu, Yue Wang, Minjie Yu, Hao Wu, Zhipeng Wang, Xuan Jiang, Xiaobing Front Cell Dev Biol Cell and Developmental Biology Recent studies have demonstrated that long non-coding RNAs (lncRNAs) are implicated in the regulation of tumor cell ferroptosis. However, the prognostic value of ferroptosis-related lncRNAs has never been comprehensively explored in glioma. In this study, the transcriptomic data and clinical information of glioma patients were downloaded from TCGA, CGGA and Rembrandt databases. We identified 24 prognostic ferroptosis-related lncRNAs, 15 of which (SNAI3-AS1, GDNF-AS1, WDFY3-AS2, CPB2-AS1, WAC-AS1, SLC25A21-AS1, ARHGEF26-AS1, LINC00641, LINC00844, MIR155HG, MIR22HG, PVT1, SNHG18, PAXIP1-AS2, and SBF2-AS1) were used to construct a ferroptosis-related lncRNAs signature (FRLS) according to the least absolute shrinkage and selection operator (LASSO) regression. The validity of this FRLS was verified in training (TCGA) and validation (CGGA and Rembrandt) cohorts, respectively. The Kaplan-Meier curves revealed a significant distinction of overall survival (OS) between the high- and low-risk groups. The receiver operating characteristic (ROC) curves exhibited robust prognostic capacity of this FRLS. A nomogram with improved accuracy for predicting OS was established based on independent prognostic factors (FRLS, age, and WHO grade). Besides, patients in the high-risk group had higher immune, stroma, and ESTIMATE scores, lower tumor purity, higher infiltration of immunosuppressive cells, and higher expression of immune checkpoints. Patients in the low-risk group benefited significantly from radiotherapy, while no survival benefit of radiotherapy was observed for those in the high-risk group. In conclusion, we identified the prognostic ferroptosis-related lncRNAs in glioma, and constructed a prognostic signature which was associated with the immune landscape of glioma microenvironment and radiotherapy response. Frontiers Media S.A. 2021-05-19 /pmc/articles/PMC8170051/ /pubmed/34095147 http://dx.doi.org/10.3389/fcell.2021.675555 Text en Copyright © 2021 Zheng, Zhou, Qiu, Wang, Yu, Wu, Wang and Jiang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Zheng, Jianglin Zhou, Zijie Qiu, Yue Wang, Minjie Yu, Hao Wu, Zhipeng Wang, Xuan Jiang, Xiaobing A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma |
title | A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma |
title_full | A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma |
title_fullStr | A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma |
title_full_unstemmed | A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma |
title_short | A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma |
title_sort | prognostic ferroptosis-related lncrnas signature associated with immune landscape and radiotherapy response in glioma |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8170051/ https://www.ncbi.nlm.nih.gov/pubmed/34095147 http://dx.doi.org/10.3389/fcell.2021.675555 |
work_keys_str_mv | AT zhengjianglin aprognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT zhouzijie aprognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT qiuyue aprognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT wangminjie aprognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT yuhao aprognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT wuzhipeng aprognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT wangxuan aprognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT jiangxiaobing aprognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT zhengjianglin prognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT zhouzijie prognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT qiuyue prognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT wangminjie prognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT yuhao prognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT wuzhipeng prognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT wangxuan prognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma AT jiangxiaobing prognosticferroptosisrelatedlncrnassignatureassociatedwithimmunelandscapeandradiotherapyresponseinglioma |