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Using Bayes theorem to estimate positive and negative predictive values for continuously and ordinally scaled diagnostic tests

OBJECTIVES: Positive predictive values (PPVs) and negative predictive values (NPVs) are frequently reported to put estimates of accuracy of a diagnostic test in clinical context and to obtain risk estimates for a given patient taking into account baseline prevalence in the population. In order to ca...

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Detalles Bibliográficos
Autor principal: Fischer, Felix
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8170576/
https://www.ncbi.nlm.nih.gov/pubmed/33650777
http://dx.doi.org/10.1002/mpr.1868
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author Fischer, Felix
author_facet Fischer, Felix
author_sort Fischer, Felix
collection PubMed
description OBJECTIVES: Positive predictive values (PPVs) and negative predictive values (NPVs) are frequently reported to put estimates of accuracy of a diagnostic test in clinical context and to obtain risk estimates for a given patient taking into account baseline prevalence in the population. In order to calculate PPV and NPV, tests with ordinally or continuously scaled results are commonly dichotomized at the expense of a loss of information. METHODS: Extending the rationale for the calculation of PPV and NPV, Bayesian theorem is used to calculate the probability of disease given the outcome of a continuously or ordinally scaled test. Probabilities of test results conditional on disease status are modeled in a Bayesian framework and subsequently transformed to probabilities of disease status conditional on test result. RESULTS: Using publicly available data, probability of a clinical depression diagnosis given PROMIS Depression scores was estimated. Comparison with PPV and NPV based on dichotomized scores shows that a more fine‐grained interpretation of test scores is possible. CONCLUSIONS: The proposed method bears the chance to facilitate accurate and meaningful interpretation of test results in clinical settings by avoiding unnecessary dichotomization of test scores.
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spelling pubmed-81705762021-06-11 Using Bayes theorem to estimate positive and negative predictive values for continuously and ordinally scaled diagnostic tests Fischer, Felix Int J Methods Psychiatr Res Original Article OBJECTIVES: Positive predictive values (PPVs) and negative predictive values (NPVs) are frequently reported to put estimates of accuracy of a diagnostic test in clinical context and to obtain risk estimates for a given patient taking into account baseline prevalence in the population. In order to calculate PPV and NPV, tests with ordinally or continuously scaled results are commonly dichotomized at the expense of a loss of information. METHODS: Extending the rationale for the calculation of PPV and NPV, Bayesian theorem is used to calculate the probability of disease given the outcome of a continuously or ordinally scaled test. Probabilities of test results conditional on disease status are modeled in a Bayesian framework and subsequently transformed to probabilities of disease status conditional on test result. RESULTS: Using publicly available data, probability of a clinical depression diagnosis given PROMIS Depression scores was estimated. Comparison with PPV and NPV based on dichotomized scores shows that a more fine‐grained interpretation of test scores is possible. CONCLUSIONS: The proposed method bears the chance to facilitate accurate and meaningful interpretation of test results in clinical settings by avoiding unnecessary dichotomization of test scores. John Wiley and Sons Inc. 2021-03-02 /pmc/articles/PMC8170576/ /pubmed/33650777 http://dx.doi.org/10.1002/mpr.1868 Text en © 2021 The Authors. International Journal of Methods in Psychiatric Research published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Article
Fischer, Felix
Using Bayes theorem to estimate positive and negative predictive values for continuously and ordinally scaled diagnostic tests
title Using Bayes theorem to estimate positive and negative predictive values for continuously and ordinally scaled diagnostic tests
title_full Using Bayes theorem to estimate positive and negative predictive values for continuously and ordinally scaled diagnostic tests
title_fullStr Using Bayes theorem to estimate positive and negative predictive values for continuously and ordinally scaled diagnostic tests
title_full_unstemmed Using Bayes theorem to estimate positive and negative predictive values for continuously and ordinally scaled diagnostic tests
title_short Using Bayes theorem to estimate positive and negative predictive values for continuously and ordinally scaled diagnostic tests
title_sort using bayes theorem to estimate positive and negative predictive values for continuously and ordinally scaled diagnostic tests
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8170576/
https://www.ncbi.nlm.nih.gov/pubmed/33650777
http://dx.doi.org/10.1002/mpr.1868
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