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Reproducibility of CT-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients

Computed Tomography (CT) is widely used in oncology for morphological evaluation and diagnosis, commonly through visual assessments, often exploiting semi-automatic tools as well. Well-established automatic methods for quantitative imaging offer the opportunity to enrich the radiologist interpretati...

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Autores principales: Mottola, Margherita, Ursprung, Stephan, Rundo, Leonardo, Sanchez, Lorena Escudero, Klatte, Tobias, Mendichovszky, Iosif, Stewart, Grant D, Sala, Evis, Bevilacqua, Alessandro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8172898/
https://www.ncbi.nlm.nih.gov/pubmed/34078993
http://dx.doi.org/10.1038/s41598-021-90985-y
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author Mottola, Margherita
Ursprung, Stephan
Rundo, Leonardo
Sanchez, Lorena Escudero
Klatte, Tobias
Mendichovszky, Iosif
Stewart, Grant D
Sala, Evis
Bevilacqua, Alessandro
author_facet Mottola, Margherita
Ursprung, Stephan
Rundo, Leonardo
Sanchez, Lorena Escudero
Klatte, Tobias
Mendichovszky, Iosif
Stewart, Grant D
Sala, Evis
Bevilacqua, Alessandro
author_sort Mottola, Margherita
collection PubMed
description Computed Tomography (CT) is widely used in oncology for morphological evaluation and diagnosis, commonly through visual assessments, often exploiting semi-automatic tools as well. Well-established automatic methods for quantitative imaging offer the opportunity to enrich the radiologist interpretation with a large number of radiomic features, which need to be highly reproducible to be used reliably in clinical practice. This study investigates feature reproducibility against noise, varying resolutions and segmentations (achieved by perturbing the regions of interest), in a CT dataset with heterogeneous voxel size of 98 renal cell carcinomas (RCCs) and 93 contralateral normal kidneys (CK). In particular, first order (FO) and second order texture features based on both 2D and 3D grey level co-occurrence matrices (GLCMs) were considered. Moreover, this study carries out a comparative analysis of three of the most commonly used interpolation methods, which need to be selected before any resampling procedure. Results showed that the Lanczos interpolation is the most effective at preserving original information in resampling, where the median slice resolution coupled with the native slice spacing allows the best reproducibility, with 94.6% and 87.7% of features, in RCC and CK, respectively. GLCMs show their maximum reproducibility when used at short distances.
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spelling pubmed-81728982021-06-04 Reproducibility of CT-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients Mottola, Margherita Ursprung, Stephan Rundo, Leonardo Sanchez, Lorena Escudero Klatte, Tobias Mendichovszky, Iosif Stewart, Grant D Sala, Evis Bevilacqua, Alessandro Sci Rep Article Computed Tomography (CT) is widely used in oncology for morphological evaluation and diagnosis, commonly through visual assessments, often exploiting semi-automatic tools as well. Well-established automatic methods for quantitative imaging offer the opportunity to enrich the radiologist interpretation with a large number of radiomic features, which need to be highly reproducible to be used reliably in clinical practice. This study investigates feature reproducibility against noise, varying resolutions and segmentations (achieved by perturbing the regions of interest), in a CT dataset with heterogeneous voxel size of 98 renal cell carcinomas (RCCs) and 93 contralateral normal kidneys (CK). In particular, first order (FO) and second order texture features based on both 2D and 3D grey level co-occurrence matrices (GLCMs) were considered. Moreover, this study carries out a comparative analysis of three of the most commonly used interpolation methods, which need to be selected before any resampling procedure. Results showed that the Lanczos interpolation is the most effective at preserving original information in resampling, where the median slice resolution coupled with the native slice spacing allows the best reproducibility, with 94.6% and 87.7% of features, in RCC and CK, respectively. GLCMs show their maximum reproducibility when used at short distances. Nature Publishing Group UK 2021-06-02 /pmc/articles/PMC8172898/ /pubmed/34078993 http://dx.doi.org/10.1038/s41598-021-90985-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Mottola, Margherita
Ursprung, Stephan
Rundo, Leonardo
Sanchez, Lorena Escudero
Klatte, Tobias
Mendichovszky, Iosif
Stewart, Grant D
Sala, Evis
Bevilacqua, Alessandro
Reproducibility of CT-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients
title Reproducibility of CT-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients
title_full Reproducibility of CT-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients
title_fullStr Reproducibility of CT-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients
title_full_unstemmed Reproducibility of CT-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients
title_short Reproducibility of CT-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients
title_sort reproducibility of ct-based radiomic features against image resampling and perturbations for tumour and healthy kidney in renal cancer patients
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8172898/
https://www.ncbi.nlm.nih.gov/pubmed/34078993
http://dx.doi.org/10.1038/s41598-021-90985-y
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