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Radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy
In the era of immunotherapy, there lacks of a reliable genomic predictor to identify optimal patient populations in combined radiotherapy and immunotherapy (CRI). The purpose of this study is to investigate whether genomic scores defining radiosensitivity are associated with immune response. Genomic...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8172905/ https://www.ncbi.nlm.nih.gov/pubmed/34078917 http://dx.doi.org/10.1038/s41525-021-00200-0 |
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author | Dai, Yang-Hong Wang, Ying-Fu Shen, Po-Chien Lo, Cheng-Hsiang Yang, Jen-Fu Lin, Chun-Shu Chao, Hsing-Lung Huang, Wen-Yen |
author_facet | Dai, Yang-Hong Wang, Ying-Fu Shen, Po-Chien Lo, Cheng-Hsiang Yang, Jen-Fu Lin, Chun-Shu Chao, Hsing-Lung Huang, Wen-Yen |
author_sort | Dai, Yang-Hong |
collection | PubMed |
description | In the era of immunotherapy, there lacks of a reliable genomic predictor to identify optimal patient populations in combined radiotherapy and immunotherapy (CRI). The purpose of this study is to investigate whether genomic scores defining radiosensitivity are associated with immune response. Genomic data from Merged Microarray-Acquired dataset (MMD) were established and the Cancer Genome Atlas (TCGA) were obtained. Based on rank-based regression model including 10 genes, radiosensitivity index (RSI) was calculated. A total of 12832 primary tumours across 11 major cancer types were analysed for the association with DNA repair, cellular stemness, macrophage polarisation, and immune subtypes. Additional 585 metastatic tissues were extracted from MET500. RSI was stratified into RSI-Low and RSI-High by a cutpoint of 0.46. Proteomic differential analysis was used to identify significant proteins according to RSI categories. Gene Set Variance Analysis (GSVA) was applied to measure the genomic pathway activity (18 genes for T-cell inflamed activity). Kaplan-Meier analysis was performed for survival analysis. RSI was significantly associated with homologous DNA repair, cancer stemness and immune-related molecular features. Lower RSI was associated with higher fraction of M1 macrophage. Differential proteomic analysis identified significantly higher TAP2 expression in RSI-Low colorectal tumours. In the TCGA cohort, dominant interferon-γ (IFN-γ) response was characterised by low RSI and predicted better response to programmed cell death 1 (PD-1) blockade. In conclusion, in addition to radiation response, our study identified RSI to be associated with various immune-related features and predicted response to PD-1 blockade, thus, highlighting its potential as a candidate biomarker for CRI. |
format | Online Article Text |
id | pubmed-8172905 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-81729052021-06-07 Radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy Dai, Yang-Hong Wang, Ying-Fu Shen, Po-Chien Lo, Cheng-Hsiang Yang, Jen-Fu Lin, Chun-Shu Chao, Hsing-Lung Huang, Wen-Yen NPJ Genom Med Article In the era of immunotherapy, there lacks of a reliable genomic predictor to identify optimal patient populations in combined radiotherapy and immunotherapy (CRI). The purpose of this study is to investigate whether genomic scores defining radiosensitivity are associated with immune response. Genomic data from Merged Microarray-Acquired dataset (MMD) were established and the Cancer Genome Atlas (TCGA) were obtained. Based on rank-based regression model including 10 genes, radiosensitivity index (RSI) was calculated. A total of 12832 primary tumours across 11 major cancer types were analysed for the association with DNA repair, cellular stemness, macrophage polarisation, and immune subtypes. Additional 585 metastatic tissues were extracted from MET500. RSI was stratified into RSI-Low and RSI-High by a cutpoint of 0.46. Proteomic differential analysis was used to identify significant proteins according to RSI categories. Gene Set Variance Analysis (GSVA) was applied to measure the genomic pathway activity (18 genes for T-cell inflamed activity). Kaplan-Meier analysis was performed for survival analysis. RSI was significantly associated with homologous DNA repair, cancer stemness and immune-related molecular features. Lower RSI was associated with higher fraction of M1 macrophage. Differential proteomic analysis identified significantly higher TAP2 expression in RSI-Low colorectal tumours. In the TCGA cohort, dominant interferon-γ (IFN-γ) response was characterised by low RSI and predicted better response to programmed cell death 1 (PD-1) blockade. In conclusion, in addition to radiation response, our study identified RSI to be associated with various immune-related features and predicted response to PD-1 blockade, thus, highlighting its potential as a candidate biomarker for CRI. Nature Publishing Group UK 2021-06-02 /pmc/articles/PMC8172905/ /pubmed/34078917 http://dx.doi.org/10.1038/s41525-021-00200-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Dai, Yang-Hong Wang, Ying-Fu Shen, Po-Chien Lo, Cheng-Hsiang Yang, Jen-Fu Lin, Chun-Shu Chao, Hsing-Lung Huang, Wen-Yen Radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy |
title | Radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy |
title_full | Radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy |
title_fullStr | Radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy |
title_full_unstemmed | Radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy |
title_short | Radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy |
title_sort | radiosensitivity index emerges as a potential biomarker for combined radiotherapy and immunotherapy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8172905/ https://www.ncbi.nlm.nih.gov/pubmed/34078917 http://dx.doi.org/10.1038/s41525-021-00200-0 |
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