Cargando…

Infection kinetics of Covid-19 and containment strategy

The devastating trail of Covid-19 is characterized by one of the highest mortality-to-infected ratio for a pandemic. Restricted therapeutic and early-stage vaccination still renders social exclusion through lockdown as the key containment mode.To understand the dynamics, we propose PHIRVD, a mechani...

Descripción completa

Detalles Bibliográficos
Autores principales: Chattopadhyay, Amit K, Choudhury, Debajyoti, Ghosh, Goutam, Kundu, Bidisha, Nath, Sujit Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8173017/
https://www.ncbi.nlm.nih.gov/pubmed/34078929
http://dx.doi.org/10.1038/s41598-021-90698-2
_version_ 1783702634369122304
author Chattopadhyay, Amit K
Choudhury, Debajyoti
Ghosh, Goutam
Kundu, Bidisha
Nath, Sujit Kumar
author_facet Chattopadhyay, Amit K
Choudhury, Debajyoti
Ghosh, Goutam
Kundu, Bidisha
Nath, Sujit Kumar
author_sort Chattopadhyay, Amit K
collection PubMed
description The devastating trail of Covid-19 is characterized by one of the highest mortality-to-infected ratio for a pandemic. Restricted therapeutic and early-stage vaccination still renders social exclusion through lockdown as the key containment mode.To understand the dynamics, we propose PHIRVD, a mechanistic infection propagation model that Machine Learns (Bayesian Markov Chain Monte Carlo) the evolution of six infection stages, namely healthy susceptible (H), predisposed comorbid susceptible (P), infected (I), recovered (R), herd immunized (V) and mortality (D), providing a highly reliable mortality prediction profile for 18 countries at varying stages of lockdown. Training data between 10 February to 29 June 2020, PHIRVD can accurately predict mortality profile up to November 2020, including the second wave kinetics. The model also suggests mortality-to-infection ratio as a more dynamic pandemic descriptor, substituting reproduction number. PHIRVD establishes the importance of early and prolonged but strategic lockdown to contain future relapse, complementing futuristic vaccine impact.
format Online
Article
Text
id pubmed-8173017
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-81730172021-06-04 Infection kinetics of Covid-19 and containment strategy Chattopadhyay, Amit K Choudhury, Debajyoti Ghosh, Goutam Kundu, Bidisha Nath, Sujit Kumar Sci Rep Article The devastating trail of Covid-19 is characterized by one of the highest mortality-to-infected ratio for a pandemic. Restricted therapeutic and early-stage vaccination still renders social exclusion through lockdown as the key containment mode.To understand the dynamics, we propose PHIRVD, a mechanistic infection propagation model that Machine Learns (Bayesian Markov Chain Monte Carlo) the evolution of six infection stages, namely healthy susceptible (H), predisposed comorbid susceptible (P), infected (I), recovered (R), herd immunized (V) and mortality (D), providing a highly reliable mortality prediction profile for 18 countries at varying stages of lockdown. Training data between 10 February to 29 June 2020, PHIRVD can accurately predict mortality profile up to November 2020, including the second wave kinetics. The model also suggests mortality-to-infection ratio as a more dynamic pandemic descriptor, substituting reproduction number. PHIRVD establishes the importance of early and prolonged but strategic lockdown to contain future relapse, complementing futuristic vaccine impact. Nature Publishing Group UK 2021-06-02 /pmc/articles/PMC8173017/ /pubmed/34078929 http://dx.doi.org/10.1038/s41598-021-90698-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chattopadhyay, Amit K
Choudhury, Debajyoti
Ghosh, Goutam
Kundu, Bidisha
Nath, Sujit Kumar
Infection kinetics of Covid-19 and containment strategy
title Infection kinetics of Covid-19 and containment strategy
title_full Infection kinetics of Covid-19 and containment strategy
title_fullStr Infection kinetics of Covid-19 and containment strategy
title_full_unstemmed Infection kinetics of Covid-19 and containment strategy
title_short Infection kinetics of Covid-19 and containment strategy
title_sort infection kinetics of covid-19 and containment strategy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8173017/
https://www.ncbi.nlm.nih.gov/pubmed/34078929
http://dx.doi.org/10.1038/s41598-021-90698-2
work_keys_str_mv AT chattopadhyayamitk infectionkineticsofcovid19andcontainmentstrategy
AT choudhurydebajyoti infectionkineticsofcovid19andcontainmentstrategy
AT ghoshgoutam infectionkineticsofcovid19andcontainmentstrategy
AT kundubidisha infectionkineticsofcovid19andcontainmentstrategy
AT nathsujitkumar infectionkineticsofcovid19andcontainmentstrategy