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3D IFPN: Improved Feature Pyramid Network for Automatic Segmentation of Gastric Tumor
Automatic segmentation of gastric tumor not only provides image-guided clinical diagnosis but also assists radiologists to read images and improve the diagnostic accuracy. However, due to the inhomogeneous intensity distribution of gastric tumors in CT scans, the ambiguous/missing boundaries, and th...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8173118/ https://www.ncbi.nlm.nih.gov/pubmed/34094903 http://dx.doi.org/10.3389/fonc.2021.618496 |
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author | Li, Haimei Liu, Bing Zhang, Yongtao Fu, Chao Han, Xiaowei Du, Lei Gao, Wenwen Chen, Yue Liu, Xiuxiu Wang, Yige Wang, Tianfu Ma, Guolin Lei, Baiying |
author_facet | Li, Haimei Liu, Bing Zhang, Yongtao Fu, Chao Han, Xiaowei Du, Lei Gao, Wenwen Chen, Yue Liu, Xiuxiu Wang, Yige Wang, Tianfu Ma, Guolin Lei, Baiying |
author_sort | Li, Haimei |
collection | PubMed |
description | Automatic segmentation of gastric tumor not only provides image-guided clinical diagnosis but also assists radiologists to read images and improve the diagnostic accuracy. However, due to the inhomogeneous intensity distribution of gastric tumors in CT scans, the ambiguous/missing boundaries, and the highly variable shapes of gastric tumors, it is quite challenging to develop an automatic solution. This study designs a novel 3D improved feature pyramidal network (3D IFPN) to automatically segment gastric tumors in computed tomography (CT) images. To meet the challenges of this extremely difficult task, the proposed 3D IFPN makes full use of the complementary information within the low and high layers of deep convolutional neural networks, which is equipped with three types of feature enhancement modules: 3D adaptive spatial feature fusion (ASFF) module, single-level feature refinement (SLFR) module, and multi-level feature refinement (MLFR) module. The 3D ASFF module adaptively suppresses the feature inconsistency in different levels and hence obtains the multi-level features with high feature invariance. Then, the SLFR module combines the adaptive features and previous multi-level features at each level to generate the multi-level refined features by skip connection and attention mechanism. The MLFR module adaptively recalibrates the channel-wise and spatial-wise responses by adding the attention operation, which improves the prediction capability of the network. Furthermore, a stage-wise deep supervision (SDS) mechanism and a hybrid loss function are also embedded to enhance the feature learning ability of the network. CT volumes dataset collected in three Chinese medical centers was used to evaluate the segmentation performance of the proposed 3D IFPN model. Experimental results indicate that our method outperforms state-of-the-art segmentation networks in gastric tumor segmentation. Moreover, to explore the generalization for other segmentation tasks, we also extend the proposed network to liver tumor segmentation in CT images of the MICCAI 2017 Liver Tumor Segmentation Challenge. |
format | Online Article Text |
id | pubmed-8173118 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81731182021-06-04 3D IFPN: Improved Feature Pyramid Network for Automatic Segmentation of Gastric Tumor Li, Haimei Liu, Bing Zhang, Yongtao Fu, Chao Han, Xiaowei Du, Lei Gao, Wenwen Chen, Yue Liu, Xiuxiu Wang, Yige Wang, Tianfu Ma, Guolin Lei, Baiying Front Oncol Oncology Automatic segmentation of gastric tumor not only provides image-guided clinical diagnosis but also assists radiologists to read images and improve the diagnostic accuracy. However, due to the inhomogeneous intensity distribution of gastric tumors in CT scans, the ambiguous/missing boundaries, and the highly variable shapes of gastric tumors, it is quite challenging to develop an automatic solution. This study designs a novel 3D improved feature pyramidal network (3D IFPN) to automatically segment gastric tumors in computed tomography (CT) images. To meet the challenges of this extremely difficult task, the proposed 3D IFPN makes full use of the complementary information within the low and high layers of deep convolutional neural networks, which is equipped with three types of feature enhancement modules: 3D adaptive spatial feature fusion (ASFF) module, single-level feature refinement (SLFR) module, and multi-level feature refinement (MLFR) module. The 3D ASFF module adaptively suppresses the feature inconsistency in different levels and hence obtains the multi-level features with high feature invariance. Then, the SLFR module combines the adaptive features and previous multi-level features at each level to generate the multi-level refined features by skip connection and attention mechanism. The MLFR module adaptively recalibrates the channel-wise and spatial-wise responses by adding the attention operation, which improves the prediction capability of the network. Furthermore, a stage-wise deep supervision (SDS) mechanism and a hybrid loss function are also embedded to enhance the feature learning ability of the network. CT volumes dataset collected in three Chinese medical centers was used to evaluate the segmentation performance of the proposed 3D IFPN model. Experimental results indicate that our method outperforms state-of-the-art segmentation networks in gastric tumor segmentation. Moreover, to explore the generalization for other segmentation tasks, we also extend the proposed network to liver tumor segmentation in CT images of the MICCAI 2017 Liver Tumor Segmentation Challenge. Frontiers Media S.A. 2021-05-20 /pmc/articles/PMC8173118/ /pubmed/34094903 http://dx.doi.org/10.3389/fonc.2021.618496 Text en Copyright © 2021 Li, Liu, Zhang, Fu, Han, Du, Gao, Chen, Liu, Wang, Wang, Ma and Lei https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Li, Haimei Liu, Bing Zhang, Yongtao Fu, Chao Han, Xiaowei Du, Lei Gao, Wenwen Chen, Yue Liu, Xiuxiu Wang, Yige Wang, Tianfu Ma, Guolin Lei, Baiying 3D IFPN: Improved Feature Pyramid Network for Automatic Segmentation of Gastric Tumor |
title | 3D IFPN: Improved Feature Pyramid Network for Automatic Segmentation of Gastric Tumor |
title_full | 3D IFPN: Improved Feature Pyramid Network for Automatic Segmentation of Gastric Tumor |
title_fullStr | 3D IFPN: Improved Feature Pyramid Network for Automatic Segmentation of Gastric Tumor |
title_full_unstemmed | 3D IFPN: Improved Feature Pyramid Network for Automatic Segmentation of Gastric Tumor |
title_short | 3D IFPN: Improved Feature Pyramid Network for Automatic Segmentation of Gastric Tumor |
title_sort | 3d ifpn: improved feature pyramid network for automatic segmentation of gastric tumor |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8173118/ https://www.ncbi.nlm.nih.gov/pubmed/34094903 http://dx.doi.org/10.3389/fonc.2021.618496 |
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