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Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example
In recent years, the amount of available literature, data and computational tools has increased exponentially, providing opportunities and challenges to make use of this vast amount of material. Here, we describe how we utilized publicly available information to identify the previously hardly charac...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8175269/ https://www.ncbi.nlm.nih.gov/pubmed/34136100 http://dx.doi.org/10.1016/j.csbj.2021.04.052 |
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author | Stielow, Bastian Simon, Clara Liefke, Robert |
author_facet | Stielow, Bastian Simon, Clara Liefke, Robert |
author_sort | Stielow, Bastian |
collection | PubMed |
description | In recent years, the amount of available literature, data and computational tools has increased exponentially, providing opportunities and challenges to make use of this vast amount of material. Here, we describe how we utilized publicly available information to identify the previously hardly characterized protein SAMD1 (SAM domain-containing protein 1) as a novel unmethylated CpG island-binding protein. This discovery is an example, how the richness of material and tools on the internet can be used to make scientific breakthroughs, but also the hurdles that may occur. Specifically, we discuss how the misrepresentation of SAMD1 in literature and databases may have prevented an earlier characterization of this protein and we address what can be learned from this example. |
format | Online Article Text |
id | pubmed-8175269 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-81752692021-06-15 Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example Stielow, Bastian Simon, Clara Liefke, Robert Comput Struct Biotechnol J Review Article In recent years, the amount of available literature, data and computational tools has increased exponentially, providing opportunities and challenges to make use of this vast amount of material. Here, we describe how we utilized publicly available information to identify the previously hardly characterized protein SAMD1 (SAM domain-containing protein 1) as a novel unmethylated CpG island-binding protein. This discovery is an example, how the richness of material and tools on the internet can be used to make scientific breakthroughs, but also the hurdles that may occur. Specifically, we discuss how the misrepresentation of SAMD1 in literature and databases may have prevented an earlier characterization of this protein and we address what can be learned from this example. Research Network of Computational and Structural Biotechnology 2021-05-14 /pmc/articles/PMC8175269/ /pubmed/34136100 http://dx.doi.org/10.1016/j.csbj.2021.04.052 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Article Stielow, Bastian Simon, Clara Liefke, Robert Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example |
title | Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example |
title_full | Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example |
title_fullStr | Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example |
title_full_unstemmed | Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example |
title_short | Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example |
title_sort | making fundamental scientific discoveries by combining information from literature, databases, and computational tools – an example |
topic | Review Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8175269/ https://www.ncbi.nlm.nih.gov/pubmed/34136100 http://dx.doi.org/10.1016/j.csbj.2021.04.052 |
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