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Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems

Type IV CRISPR systems encode CRISPR associated (Cas)-like proteins that combine with small RNAs to form multi-subunit ribonucleoprotein complexes. However, the lack of Cas nucleases, integrases, and other genetic features commonly observed in most CRISPR systems has made it difficult to predict typ...

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Autores principales: Taylor, Hannah N., Laderman, Eric, Armbrust, Matt, Hallmark, Thomson, Keiser, Dylan, Bondy-Denomy, Joseph, Jackson, Ryan N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8175902/
https://www.ncbi.nlm.nih.gov/pubmed/34093491
http://dx.doi.org/10.3389/fmicb.2021.671522
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author Taylor, Hannah N.
Laderman, Eric
Armbrust, Matt
Hallmark, Thomson
Keiser, Dylan
Bondy-Denomy, Joseph
Jackson, Ryan N.
author_facet Taylor, Hannah N.
Laderman, Eric
Armbrust, Matt
Hallmark, Thomson
Keiser, Dylan
Bondy-Denomy, Joseph
Jackson, Ryan N.
author_sort Taylor, Hannah N.
collection PubMed
description Type IV CRISPR systems encode CRISPR associated (Cas)-like proteins that combine with small RNAs to form multi-subunit ribonucleoprotein complexes. However, the lack of Cas nucleases, integrases, and other genetic features commonly observed in most CRISPR systems has made it difficult to predict type IV mechanisms of action and biological function. Here we summarize recent bioinformatic and experimental advancements that collectively provide the first glimpses into the function of specific type IV subtypes. We also provide a bioinformatic and structural analysis of type IV-specific proteins within the context of multi-subunit (class 1) CRISPR systems, informing future studies aimed at elucidating the function of these cryptic systems.
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spelling pubmed-81759022021-06-05 Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems Taylor, Hannah N. Laderman, Eric Armbrust, Matt Hallmark, Thomson Keiser, Dylan Bondy-Denomy, Joseph Jackson, Ryan N. Front Microbiol Microbiology Type IV CRISPR systems encode CRISPR associated (Cas)-like proteins that combine with small RNAs to form multi-subunit ribonucleoprotein complexes. However, the lack of Cas nucleases, integrases, and other genetic features commonly observed in most CRISPR systems has made it difficult to predict type IV mechanisms of action and biological function. Here we summarize recent bioinformatic and experimental advancements that collectively provide the first glimpses into the function of specific type IV subtypes. We also provide a bioinformatic and structural analysis of type IV-specific proteins within the context of multi-subunit (class 1) CRISPR systems, informing future studies aimed at elucidating the function of these cryptic systems. Frontiers Media S.A. 2021-05-21 /pmc/articles/PMC8175902/ /pubmed/34093491 http://dx.doi.org/10.3389/fmicb.2021.671522 Text en Copyright © 2021 Taylor, Laderman, Armbrust, Hallmark, Keiser, Bondy-Denomy and Jackson. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Taylor, Hannah N.
Laderman, Eric
Armbrust, Matt
Hallmark, Thomson
Keiser, Dylan
Bondy-Denomy, Joseph
Jackson, Ryan N.
Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems
title Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems
title_full Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems
title_fullStr Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems
title_full_unstemmed Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems
title_short Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems
title_sort positioning diverse type iv structures and functions within class 1 crispr-cas systems
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8175902/
https://www.ncbi.nlm.nih.gov/pubmed/34093491
http://dx.doi.org/10.3389/fmicb.2021.671522
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