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Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems
Type IV CRISPR systems encode CRISPR associated (Cas)-like proteins that combine with small RNAs to form multi-subunit ribonucleoprotein complexes. However, the lack of Cas nucleases, integrases, and other genetic features commonly observed in most CRISPR systems has made it difficult to predict typ...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8175902/ https://www.ncbi.nlm.nih.gov/pubmed/34093491 http://dx.doi.org/10.3389/fmicb.2021.671522 |
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author | Taylor, Hannah N. Laderman, Eric Armbrust, Matt Hallmark, Thomson Keiser, Dylan Bondy-Denomy, Joseph Jackson, Ryan N. |
author_facet | Taylor, Hannah N. Laderman, Eric Armbrust, Matt Hallmark, Thomson Keiser, Dylan Bondy-Denomy, Joseph Jackson, Ryan N. |
author_sort | Taylor, Hannah N. |
collection | PubMed |
description | Type IV CRISPR systems encode CRISPR associated (Cas)-like proteins that combine with small RNAs to form multi-subunit ribonucleoprotein complexes. However, the lack of Cas nucleases, integrases, and other genetic features commonly observed in most CRISPR systems has made it difficult to predict type IV mechanisms of action and biological function. Here we summarize recent bioinformatic and experimental advancements that collectively provide the first glimpses into the function of specific type IV subtypes. We also provide a bioinformatic and structural analysis of type IV-specific proteins within the context of multi-subunit (class 1) CRISPR systems, informing future studies aimed at elucidating the function of these cryptic systems. |
format | Online Article Text |
id | pubmed-8175902 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81759022021-06-05 Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems Taylor, Hannah N. Laderman, Eric Armbrust, Matt Hallmark, Thomson Keiser, Dylan Bondy-Denomy, Joseph Jackson, Ryan N. Front Microbiol Microbiology Type IV CRISPR systems encode CRISPR associated (Cas)-like proteins that combine with small RNAs to form multi-subunit ribonucleoprotein complexes. However, the lack of Cas nucleases, integrases, and other genetic features commonly observed in most CRISPR systems has made it difficult to predict type IV mechanisms of action and biological function. Here we summarize recent bioinformatic and experimental advancements that collectively provide the first glimpses into the function of specific type IV subtypes. We also provide a bioinformatic and structural analysis of type IV-specific proteins within the context of multi-subunit (class 1) CRISPR systems, informing future studies aimed at elucidating the function of these cryptic systems. Frontiers Media S.A. 2021-05-21 /pmc/articles/PMC8175902/ /pubmed/34093491 http://dx.doi.org/10.3389/fmicb.2021.671522 Text en Copyright © 2021 Taylor, Laderman, Armbrust, Hallmark, Keiser, Bondy-Denomy and Jackson. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Taylor, Hannah N. Laderman, Eric Armbrust, Matt Hallmark, Thomson Keiser, Dylan Bondy-Denomy, Joseph Jackson, Ryan N. Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems |
title | Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems |
title_full | Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems |
title_fullStr | Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems |
title_full_unstemmed | Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems |
title_short | Positioning Diverse Type IV Structures and Functions Within Class 1 CRISPR-Cas Systems |
title_sort | positioning diverse type iv structures and functions within class 1 crispr-cas systems |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8175902/ https://www.ncbi.nlm.nih.gov/pubmed/34093491 http://dx.doi.org/10.3389/fmicb.2021.671522 |
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