Cargando…
Comprehensive Analysis of Expression and Prognostic Value of GATAs in Lung Cancer
GATAs are a family of transcription factors that play sophisticated and extensive roles in cell fate transitions and tissue morphogenesis during embryonic development. Emerging evidence indicate that GATAs are involved in tumorigenesis of lung cancer (LC). However, the distinct roles, diverse expres...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Ivyspring International Publisher
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8176258/ https://www.ncbi.nlm.nih.gov/pubmed/34093794 http://dx.doi.org/10.7150/jca.52623 |
_version_ | 1783703224247648256 |
---|---|
author | Gong, Chengwu Fan, Yun Zhou, Xueliang Lai, Songqing Wang, Lijun Liu, Jichun |
author_facet | Gong, Chengwu Fan, Yun Zhou, Xueliang Lai, Songqing Wang, Lijun Liu, Jichun |
author_sort | Gong, Chengwu |
collection | PubMed |
description | GATAs are a family of transcription factors that play sophisticated and extensive roles in cell fate transitions and tissue morphogenesis during embryonic development. Emerging evidence indicate that GATAs are involved in tumorigenesis of lung cancer (LC). However, the distinct roles, diverse expression patterns and prognostic values of six GATA family members in LC have yet to be elucidated. In the present study, the diverse expression patterns, prognostic values, genetic mutations, protein-protein interaction(PPI) networks of GATAs, Gene Ontology enrichment and Kyoto Encyclopedia of Genes and Genomes pathway in LC patients were analyzed using a serious of databases, including ONCOMINE database, Cancer Cell Line Encyclopedia database, the Human Protein Atlas, the Gene Expression Profiling Interactive Analysis database, the Kaplan-Meier plotter, cBioPortal, String database and database Database for Annotation, Visualization, and Integrated Discovery. The mRNA expression levels of GATA1/2/4/5/6 were downregulated, while GATA3 showed abnormal expressions of up-regulation and down-regulation in patients with LC. Aberrant GATAs mRNA expression was connected with prognosis. Furthermore, genetic alterations mainly appeared in GATA4. Gene Ontology enrichment and network analysis demonstrated that GATAs and their 50 interactors were primarily associated with positive regulation of transcription from RNA polymerase II promoter, transcription factor complex, transcription factor binding Jak-STAT signaling pathway. This comprehensive bioinformatic analysis demonstrated that GATA1/2/3/4/6 may be new prognosis factors, and GATA2/5/6 may be potential targets for personalized therapy for patients with LC, but further studies are requisite to analyze the mechanism of their carcinogenicity and investigate novel drug treatment. Finally, these findings would conduce to a better understanding of the unique roles of GATAs in LC. |
format | Online Article Text |
id | pubmed-8176258 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-81762582021-06-04 Comprehensive Analysis of Expression and Prognostic Value of GATAs in Lung Cancer Gong, Chengwu Fan, Yun Zhou, Xueliang Lai, Songqing Wang, Lijun Liu, Jichun J Cancer Research Paper GATAs are a family of transcription factors that play sophisticated and extensive roles in cell fate transitions and tissue morphogenesis during embryonic development. Emerging evidence indicate that GATAs are involved in tumorigenesis of lung cancer (LC). However, the distinct roles, diverse expression patterns and prognostic values of six GATA family members in LC have yet to be elucidated. In the present study, the diverse expression patterns, prognostic values, genetic mutations, protein-protein interaction(PPI) networks of GATAs, Gene Ontology enrichment and Kyoto Encyclopedia of Genes and Genomes pathway in LC patients were analyzed using a serious of databases, including ONCOMINE database, Cancer Cell Line Encyclopedia database, the Human Protein Atlas, the Gene Expression Profiling Interactive Analysis database, the Kaplan-Meier plotter, cBioPortal, String database and database Database for Annotation, Visualization, and Integrated Discovery. The mRNA expression levels of GATA1/2/4/5/6 were downregulated, while GATA3 showed abnormal expressions of up-regulation and down-regulation in patients with LC. Aberrant GATAs mRNA expression was connected with prognosis. Furthermore, genetic alterations mainly appeared in GATA4. Gene Ontology enrichment and network analysis demonstrated that GATAs and their 50 interactors were primarily associated with positive regulation of transcription from RNA polymerase II promoter, transcription factor complex, transcription factor binding Jak-STAT signaling pathway. This comprehensive bioinformatic analysis demonstrated that GATA1/2/3/4/6 may be new prognosis factors, and GATA2/5/6 may be potential targets for personalized therapy for patients with LC, but further studies are requisite to analyze the mechanism of their carcinogenicity and investigate novel drug treatment. Finally, these findings would conduce to a better understanding of the unique roles of GATAs in LC. Ivyspring International Publisher 2021-05-05 /pmc/articles/PMC8176258/ /pubmed/34093794 http://dx.doi.org/10.7150/jca.52623 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Gong, Chengwu Fan, Yun Zhou, Xueliang Lai, Songqing Wang, Lijun Liu, Jichun Comprehensive Analysis of Expression and Prognostic Value of GATAs in Lung Cancer |
title | Comprehensive Analysis of Expression and Prognostic Value of GATAs in Lung Cancer |
title_full | Comprehensive Analysis of Expression and Prognostic Value of GATAs in Lung Cancer |
title_fullStr | Comprehensive Analysis of Expression and Prognostic Value of GATAs in Lung Cancer |
title_full_unstemmed | Comprehensive Analysis of Expression and Prognostic Value of GATAs in Lung Cancer |
title_short | Comprehensive Analysis of Expression and Prognostic Value of GATAs in Lung Cancer |
title_sort | comprehensive analysis of expression and prognostic value of gatas in lung cancer |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8176258/ https://www.ncbi.nlm.nih.gov/pubmed/34093794 http://dx.doi.org/10.7150/jca.52623 |
work_keys_str_mv | AT gongchengwu comprehensiveanalysisofexpressionandprognosticvalueofgatasinlungcancer AT fanyun comprehensiveanalysisofexpressionandprognosticvalueofgatasinlungcancer AT zhouxueliang comprehensiveanalysisofexpressionandprognosticvalueofgatasinlungcancer AT laisongqing comprehensiveanalysisofexpressionandprognosticvalueofgatasinlungcancer AT wanglijun comprehensiveanalysisofexpressionandprognosticvalueofgatasinlungcancer AT liujichun comprehensiveanalysisofexpressionandprognosticvalueofgatasinlungcancer |