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An optimized transfer learning-based approach for automatic diagnosis of COVID-19 from chest x-ray images

Accurate and fast detection of COVID-19 patients is crucial to control this pandemic. Due to the scarcity of COVID-19 testing kits, especially in developing countries, there is a crucial need to rely on alternative diagnosis methods. Deep learning architectures built on image modalities can speed up...

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Detalles Bibliográficos
Autores principales: M. Bahgat, Waleed, Magdy Balaha, Hossam, AbdulAzeem, Yousry, Badawy, Mahmoud M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8176553/
https://www.ncbi.nlm.nih.gov/pubmed/34141886
http://dx.doi.org/10.7717/peerj-cs.555
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author M. Bahgat, Waleed
Magdy Balaha, Hossam
AbdulAzeem, Yousry
Badawy, Mahmoud M.
author_facet M. Bahgat, Waleed
Magdy Balaha, Hossam
AbdulAzeem, Yousry
Badawy, Mahmoud M.
author_sort M. Bahgat, Waleed
collection PubMed
description Accurate and fast detection of COVID-19 patients is crucial to control this pandemic. Due to the scarcity of COVID-19 testing kits, especially in developing countries, there is a crucial need to rely on alternative diagnosis methods. Deep learning architectures built on image modalities can speed up the COVID-19 pneumonia classification from other types of pneumonia. The transfer learning approach is better suited to automatically detect COVID-19 cases due to the limited availability of medical images. This paper introduces an Optimized Transfer Learning-based Approach for Automatic Detection of COVID-19 (OTLD-COVID-19) that applies an optimization algorithm to twelve CNN architectures to diagnose COVID-19 cases using chest x-ray images. The OTLD-COVID-19 approach adapts Manta-Ray Foraging Optimization (MRFO) algorithm to optimize the network hyperparameters’ values of the CNN architectures to improve their classification performance. The proposed dataset is collected from eight different public datasets to classify 4-class cases (COVID-19, pneumonia bacterial, pneumonia viral, and normal). The experimental result showed that DenseNet121 optimized architecture achieves the best performance. The evaluation results based on Loss, Accuracy, F1-score, Precision, Recall, Specificity, AUC, Sensitivity, IoU, and Dice values reached 0.0523, 98.47%, 0.9849, 98.50%, 98.47%, 99.50%, 0.9983, 0.9847, 0.9860, and 0.9879 respectively.
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spelling pubmed-81765532021-06-16 An optimized transfer learning-based approach for automatic diagnosis of COVID-19 from chest x-ray images M. Bahgat, Waleed Magdy Balaha, Hossam AbdulAzeem, Yousry Badawy, Mahmoud M. PeerJ Comput Sci Bioinformatics Accurate and fast detection of COVID-19 patients is crucial to control this pandemic. Due to the scarcity of COVID-19 testing kits, especially in developing countries, there is a crucial need to rely on alternative diagnosis methods. Deep learning architectures built on image modalities can speed up the COVID-19 pneumonia classification from other types of pneumonia. The transfer learning approach is better suited to automatically detect COVID-19 cases due to the limited availability of medical images. This paper introduces an Optimized Transfer Learning-based Approach for Automatic Detection of COVID-19 (OTLD-COVID-19) that applies an optimization algorithm to twelve CNN architectures to diagnose COVID-19 cases using chest x-ray images. The OTLD-COVID-19 approach adapts Manta-Ray Foraging Optimization (MRFO) algorithm to optimize the network hyperparameters’ values of the CNN architectures to improve their classification performance. The proposed dataset is collected from eight different public datasets to classify 4-class cases (COVID-19, pneumonia bacterial, pneumonia viral, and normal). The experimental result showed that DenseNet121 optimized architecture achieves the best performance. The evaluation results based on Loss, Accuracy, F1-score, Precision, Recall, Specificity, AUC, Sensitivity, IoU, and Dice values reached 0.0523, 98.47%, 0.9849, 98.50%, 98.47%, 99.50%, 0.9983, 0.9847, 0.9860, and 0.9879 respectively. PeerJ Inc. 2021-05-27 /pmc/articles/PMC8176553/ /pubmed/34141886 http://dx.doi.org/10.7717/peerj-cs.555 Text en © 2021 M. Bahgat et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ Computer Science) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
M. Bahgat, Waleed
Magdy Balaha, Hossam
AbdulAzeem, Yousry
Badawy, Mahmoud M.
An optimized transfer learning-based approach for automatic diagnosis of COVID-19 from chest x-ray images
title An optimized transfer learning-based approach for automatic diagnosis of COVID-19 from chest x-ray images
title_full An optimized transfer learning-based approach for automatic diagnosis of COVID-19 from chest x-ray images
title_fullStr An optimized transfer learning-based approach for automatic diagnosis of COVID-19 from chest x-ray images
title_full_unstemmed An optimized transfer learning-based approach for automatic diagnosis of COVID-19 from chest x-ray images
title_short An optimized transfer learning-based approach for automatic diagnosis of COVID-19 from chest x-ray images
title_sort optimized transfer learning-based approach for automatic diagnosis of covid-19 from chest x-ray images
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8176553/
https://www.ncbi.nlm.nih.gov/pubmed/34141886
http://dx.doi.org/10.7717/peerj-cs.555
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