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DUNEuro—A software toolbox for forward modeling in bioelectromagnetism

Accurate and efficient source analysis in electro- and magnetoencephalography using sophisticated realistic head geometries requires advanced numerical approaches. This paper presents DUNEuro, a free and open-source C++ software toolbox for the numerical computation of forward solutions in bioelectr...

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Autores principales: Schrader, Sophie, Westhoff, Andreas, Piastra, Maria Carla, Miinalainen, Tuuli, Pursiainen, Sampsa, Vorwerk, Johannes, Brinck, Heinrich, Wolters, Carsten H., Engwer, Christian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8177522/
https://www.ncbi.nlm.nih.gov/pubmed/34086715
http://dx.doi.org/10.1371/journal.pone.0252431
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author Schrader, Sophie
Westhoff, Andreas
Piastra, Maria Carla
Miinalainen, Tuuli
Pursiainen, Sampsa
Vorwerk, Johannes
Brinck, Heinrich
Wolters, Carsten H.
Engwer, Christian
author_facet Schrader, Sophie
Westhoff, Andreas
Piastra, Maria Carla
Miinalainen, Tuuli
Pursiainen, Sampsa
Vorwerk, Johannes
Brinck, Heinrich
Wolters, Carsten H.
Engwer, Christian
author_sort Schrader, Sophie
collection PubMed
description Accurate and efficient source analysis in electro- and magnetoencephalography using sophisticated realistic head geometries requires advanced numerical approaches. This paper presents DUNEuro, a free and open-source C++ software toolbox for the numerical computation of forward solutions in bioelectromagnetism. Building upon the DUNE framework, it provides implementations of modern fitted and unfitted finite element methods to efficiently solve the forward problems of electro- and magnetoencephalography. The user can choose between a variety of different source models that are implemented. The software’s aim is to provide interfaces that are extendable and easy-to-use. In order to enable a closer integration into existing analysis pipelines, interfaces to Python and MATLAB are provided. The practical use is demonstrated by a source analysis example of somatosensory evoked potentials using a realistic six-compartment head model. Detailed installation instructions and example scripts using spherical and realistic head models are appended.
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spelling pubmed-81775222021-06-07 DUNEuro—A software toolbox for forward modeling in bioelectromagnetism Schrader, Sophie Westhoff, Andreas Piastra, Maria Carla Miinalainen, Tuuli Pursiainen, Sampsa Vorwerk, Johannes Brinck, Heinrich Wolters, Carsten H. Engwer, Christian PLoS One Research Article Accurate and efficient source analysis in electro- and magnetoencephalography using sophisticated realistic head geometries requires advanced numerical approaches. This paper presents DUNEuro, a free and open-source C++ software toolbox for the numerical computation of forward solutions in bioelectromagnetism. Building upon the DUNE framework, it provides implementations of modern fitted and unfitted finite element methods to efficiently solve the forward problems of electro- and magnetoencephalography. The user can choose between a variety of different source models that are implemented. The software’s aim is to provide interfaces that are extendable and easy-to-use. In order to enable a closer integration into existing analysis pipelines, interfaces to Python and MATLAB are provided. The practical use is demonstrated by a source analysis example of somatosensory evoked potentials using a realistic six-compartment head model. Detailed installation instructions and example scripts using spherical and realistic head models are appended. Public Library of Science 2021-06-04 /pmc/articles/PMC8177522/ /pubmed/34086715 http://dx.doi.org/10.1371/journal.pone.0252431 Text en © 2021 Schrader et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Schrader, Sophie
Westhoff, Andreas
Piastra, Maria Carla
Miinalainen, Tuuli
Pursiainen, Sampsa
Vorwerk, Johannes
Brinck, Heinrich
Wolters, Carsten H.
Engwer, Christian
DUNEuro—A software toolbox for forward modeling in bioelectromagnetism
title DUNEuro—A software toolbox for forward modeling in bioelectromagnetism
title_full DUNEuro—A software toolbox for forward modeling in bioelectromagnetism
title_fullStr DUNEuro—A software toolbox for forward modeling in bioelectromagnetism
title_full_unstemmed DUNEuro—A software toolbox for forward modeling in bioelectromagnetism
title_short DUNEuro—A software toolbox for forward modeling in bioelectromagnetism
title_sort duneuro—a software toolbox for forward modeling in bioelectromagnetism
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8177522/
https://www.ncbi.nlm.nih.gov/pubmed/34086715
http://dx.doi.org/10.1371/journal.pone.0252431
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