Cargando…
DUNEuro—A software toolbox for forward modeling in bioelectromagnetism
Accurate and efficient source analysis in electro- and magnetoencephalography using sophisticated realistic head geometries requires advanced numerical approaches. This paper presents DUNEuro, a free and open-source C++ software toolbox for the numerical computation of forward solutions in bioelectr...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8177522/ https://www.ncbi.nlm.nih.gov/pubmed/34086715 http://dx.doi.org/10.1371/journal.pone.0252431 |
_version_ | 1783703397686312960 |
---|---|
author | Schrader, Sophie Westhoff, Andreas Piastra, Maria Carla Miinalainen, Tuuli Pursiainen, Sampsa Vorwerk, Johannes Brinck, Heinrich Wolters, Carsten H. Engwer, Christian |
author_facet | Schrader, Sophie Westhoff, Andreas Piastra, Maria Carla Miinalainen, Tuuli Pursiainen, Sampsa Vorwerk, Johannes Brinck, Heinrich Wolters, Carsten H. Engwer, Christian |
author_sort | Schrader, Sophie |
collection | PubMed |
description | Accurate and efficient source analysis in electro- and magnetoencephalography using sophisticated realistic head geometries requires advanced numerical approaches. This paper presents DUNEuro, a free and open-source C++ software toolbox for the numerical computation of forward solutions in bioelectromagnetism. Building upon the DUNE framework, it provides implementations of modern fitted and unfitted finite element methods to efficiently solve the forward problems of electro- and magnetoencephalography. The user can choose between a variety of different source models that are implemented. The software’s aim is to provide interfaces that are extendable and easy-to-use. In order to enable a closer integration into existing analysis pipelines, interfaces to Python and MATLAB are provided. The practical use is demonstrated by a source analysis example of somatosensory evoked potentials using a realistic six-compartment head model. Detailed installation instructions and example scripts using spherical and realistic head models are appended. |
format | Online Article Text |
id | pubmed-8177522 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-81775222021-06-07 DUNEuro—A software toolbox for forward modeling in bioelectromagnetism Schrader, Sophie Westhoff, Andreas Piastra, Maria Carla Miinalainen, Tuuli Pursiainen, Sampsa Vorwerk, Johannes Brinck, Heinrich Wolters, Carsten H. Engwer, Christian PLoS One Research Article Accurate and efficient source analysis in electro- and magnetoencephalography using sophisticated realistic head geometries requires advanced numerical approaches. This paper presents DUNEuro, a free and open-source C++ software toolbox for the numerical computation of forward solutions in bioelectromagnetism. Building upon the DUNE framework, it provides implementations of modern fitted and unfitted finite element methods to efficiently solve the forward problems of electro- and magnetoencephalography. The user can choose between a variety of different source models that are implemented. The software’s aim is to provide interfaces that are extendable and easy-to-use. In order to enable a closer integration into existing analysis pipelines, interfaces to Python and MATLAB are provided. The practical use is demonstrated by a source analysis example of somatosensory evoked potentials using a realistic six-compartment head model. Detailed installation instructions and example scripts using spherical and realistic head models are appended. Public Library of Science 2021-06-04 /pmc/articles/PMC8177522/ /pubmed/34086715 http://dx.doi.org/10.1371/journal.pone.0252431 Text en © 2021 Schrader et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Schrader, Sophie Westhoff, Andreas Piastra, Maria Carla Miinalainen, Tuuli Pursiainen, Sampsa Vorwerk, Johannes Brinck, Heinrich Wolters, Carsten H. Engwer, Christian DUNEuro—A software toolbox for forward modeling in bioelectromagnetism |
title | DUNEuro—A software toolbox for forward modeling in bioelectromagnetism |
title_full | DUNEuro—A software toolbox for forward modeling in bioelectromagnetism |
title_fullStr | DUNEuro—A software toolbox for forward modeling in bioelectromagnetism |
title_full_unstemmed | DUNEuro—A software toolbox for forward modeling in bioelectromagnetism |
title_short | DUNEuro—A software toolbox for forward modeling in bioelectromagnetism |
title_sort | duneuro—a software toolbox for forward modeling in bioelectromagnetism |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8177522/ https://www.ncbi.nlm.nih.gov/pubmed/34086715 http://dx.doi.org/10.1371/journal.pone.0252431 |
work_keys_str_mv | AT schradersophie duneuroasoftwaretoolboxforforwardmodelinginbioelectromagnetism AT westhoffandreas duneuroasoftwaretoolboxforforwardmodelinginbioelectromagnetism AT piastramariacarla duneuroasoftwaretoolboxforforwardmodelinginbioelectromagnetism AT miinalainentuuli duneuroasoftwaretoolboxforforwardmodelinginbioelectromagnetism AT pursiainensampsa duneuroasoftwaretoolboxforforwardmodelinginbioelectromagnetism AT vorwerkjohannes duneuroasoftwaretoolboxforforwardmodelinginbioelectromagnetism AT brinckheinrich duneuroasoftwaretoolboxforforwardmodelinginbioelectromagnetism AT wolterscarstenh duneuroasoftwaretoolboxforforwardmodelinginbioelectromagnetism AT engwerchristian duneuroasoftwaretoolboxforforwardmodelinginbioelectromagnetism |