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DUDA-Net: a double U-shaped dilated attention network for automatic infection area segmentation in COVID-19 lung CT images

PURPOSE: The global health crisis caused by coronavirus disease 2019 (COVID-19) is a common threat facing all humankind. In the process of diagnosing COVID-19 and treating patients, automatic COVID-19 lesion segmentation from computed tomography images helps doctors and patients intuitively understa...

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Autores principales: Xie, Feng, Huang, Zheng, Shi, Zhengjin, Wang, Tianyu, Song, Guoli, Wang, Bolun, Liu, Zihong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8178668/
https://www.ncbi.nlm.nih.gov/pubmed/34089438
http://dx.doi.org/10.1007/s11548-021-02418-w
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author Xie, Feng
Huang, Zheng
Shi, Zhengjin
Wang, Tianyu
Song, Guoli
Wang, Bolun
Liu, Zihong
author_facet Xie, Feng
Huang, Zheng
Shi, Zhengjin
Wang, Tianyu
Song, Guoli
Wang, Bolun
Liu, Zihong
author_sort Xie, Feng
collection PubMed
description PURPOSE: The global health crisis caused by coronavirus disease 2019 (COVID-19) is a common threat facing all humankind. In the process of diagnosing COVID-19 and treating patients, automatic COVID-19 lesion segmentation from computed tomography images helps doctors and patients intuitively understand lung infection. To effectively quantify lung infections, a convolutional neural network for automatic lung infection segmentation based on deep learning is proposed. METHOD: This new type of COVID-19 lesion segmentation network is based on a U-Net backbone. First, a coarse segmentation network is constructed to extract the lung areas. Second, in the encoding and decoding process of the fine segmentation network, a new soft attention mechanism, namely the dilated convolutional attention (DCA) mechanism, is introduced to enable the network to focus on better quantitative information to strengthen the network's segmentation ability in the subtle areas of the lesions. RESULTS: The experimental results show that the average Dice similarity coefficient (DSC), sensitivity (SEN), specificity (SPE) and area under the curve of DUDA-Net are 87.06%, 90.85%, 99.59% and 0.965, respectively. In addition, the introduction of a cascade U-shaped network scheme and DCA mechanism can improve the DSC by 24.46% and 14.33%, respectively. CONCLUSION: The proposed DUDA-Net approach can automatically segment COVID-19 lesions with excellent performance, which indicates that the proposed method is of great clinical significance. In addition, the introduction of a coarse segmentation network and DCA mechanism can improve the COVID-19 segmentation performance.
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spelling pubmed-81786682021-06-05 DUDA-Net: a double U-shaped dilated attention network for automatic infection area segmentation in COVID-19 lung CT images Xie, Feng Huang, Zheng Shi, Zhengjin Wang, Tianyu Song, Guoli Wang, Bolun Liu, Zihong Int J Comput Assist Radiol Surg Original Article PURPOSE: The global health crisis caused by coronavirus disease 2019 (COVID-19) is a common threat facing all humankind. In the process of diagnosing COVID-19 and treating patients, automatic COVID-19 lesion segmentation from computed tomography images helps doctors and patients intuitively understand lung infection. To effectively quantify lung infections, a convolutional neural network for automatic lung infection segmentation based on deep learning is proposed. METHOD: This new type of COVID-19 lesion segmentation network is based on a U-Net backbone. First, a coarse segmentation network is constructed to extract the lung areas. Second, in the encoding and decoding process of the fine segmentation network, a new soft attention mechanism, namely the dilated convolutional attention (DCA) mechanism, is introduced to enable the network to focus on better quantitative information to strengthen the network's segmentation ability in the subtle areas of the lesions. RESULTS: The experimental results show that the average Dice similarity coefficient (DSC), sensitivity (SEN), specificity (SPE) and area under the curve of DUDA-Net are 87.06%, 90.85%, 99.59% and 0.965, respectively. In addition, the introduction of a cascade U-shaped network scheme and DCA mechanism can improve the DSC by 24.46% and 14.33%, respectively. CONCLUSION: The proposed DUDA-Net approach can automatically segment COVID-19 lesions with excellent performance, which indicates that the proposed method is of great clinical significance. In addition, the introduction of a coarse segmentation network and DCA mechanism can improve the COVID-19 segmentation performance. Springer International Publishing 2021-06-05 2021 /pmc/articles/PMC8178668/ /pubmed/34089438 http://dx.doi.org/10.1007/s11548-021-02418-w Text en © CARS 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Xie, Feng
Huang, Zheng
Shi, Zhengjin
Wang, Tianyu
Song, Guoli
Wang, Bolun
Liu, Zihong
DUDA-Net: a double U-shaped dilated attention network for automatic infection area segmentation in COVID-19 lung CT images
title DUDA-Net: a double U-shaped dilated attention network for automatic infection area segmentation in COVID-19 lung CT images
title_full DUDA-Net: a double U-shaped dilated attention network for automatic infection area segmentation in COVID-19 lung CT images
title_fullStr DUDA-Net: a double U-shaped dilated attention network for automatic infection area segmentation in COVID-19 lung CT images
title_full_unstemmed DUDA-Net: a double U-shaped dilated attention network for automatic infection area segmentation in COVID-19 lung CT images
title_short DUDA-Net: a double U-shaped dilated attention network for automatic infection area segmentation in COVID-19 lung CT images
title_sort duda-net: a double u-shaped dilated attention network for automatic infection area segmentation in covid-19 lung ct images
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8178668/
https://www.ncbi.nlm.nih.gov/pubmed/34089438
http://dx.doi.org/10.1007/s11548-021-02418-w
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