Cargando…
Retrosynthetic accessibility score (RAscore) – rapid machine learned synthesizability classification from AI driven retrosynthetic planning
Computer aided synthesis planning (CASP) is part of a suite of artificial intelligence (AI) based tools that are able to propose synthesis routes to a wide range of compounds. However, at present they are too slow to be used to screen the synthetic feasibility of millions of generated or enumerated...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8179384/ https://www.ncbi.nlm.nih.gov/pubmed/34164104 http://dx.doi.org/10.1039/d0sc05401a |
_version_ | 1783703768427134976 |
---|---|
author | Thakkar, Amol Chadimová, Veronika Bjerrum, Esben Jannik Engkvist, Ola Reymond, Jean-Louis |
author_facet | Thakkar, Amol Chadimová, Veronika Bjerrum, Esben Jannik Engkvist, Ola Reymond, Jean-Louis |
author_sort | Thakkar, Amol |
collection | PubMed |
description | Computer aided synthesis planning (CASP) is part of a suite of artificial intelligence (AI) based tools that are able to propose synthesis routes to a wide range of compounds. However, at present they are too slow to be used to screen the synthetic feasibility of millions of generated or enumerated compounds before identification of potential bioactivity by virtual screening (VS) workflows. Herein we report a machine learning (ML) based method capable of classifying whether a synthetic route can be identified for a particular compound or not by the CASP tool AiZynthFinder. The resulting ML models return a retrosynthetic accessibility score (RAscore) of any molecule of interest, and computes at least 4500 times faster than retrosynthetic analysis performed by the underlying CASP tool. The RAscore should be useful for pre-screening millions of virtual molecules from enumerated databases or generative models for synthetic accessibility and produce higher quality databases for virtual screening of biological activity. |
format | Online Article Text |
id | pubmed-8179384 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-81793842021-06-22 Retrosynthetic accessibility score (RAscore) – rapid machine learned synthesizability classification from AI driven retrosynthetic planning Thakkar, Amol Chadimová, Veronika Bjerrum, Esben Jannik Engkvist, Ola Reymond, Jean-Louis Chem Sci Chemistry Computer aided synthesis planning (CASP) is part of a suite of artificial intelligence (AI) based tools that are able to propose synthesis routes to a wide range of compounds. However, at present they are too slow to be used to screen the synthetic feasibility of millions of generated or enumerated compounds before identification of potential bioactivity by virtual screening (VS) workflows. Herein we report a machine learning (ML) based method capable of classifying whether a synthetic route can be identified for a particular compound or not by the CASP tool AiZynthFinder. The resulting ML models return a retrosynthetic accessibility score (RAscore) of any molecule of interest, and computes at least 4500 times faster than retrosynthetic analysis performed by the underlying CASP tool. The RAscore should be useful for pre-screening millions of virtual molecules from enumerated databases or generative models for synthetic accessibility and produce higher quality databases for virtual screening of biological activity. The Royal Society of Chemistry 2021-01-22 /pmc/articles/PMC8179384/ /pubmed/34164104 http://dx.doi.org/10.1039/d0sc05401a Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Thakkar, Amol Chadimová, Veronika Bjerrum, Esben Jannik Engkvist, Ola Reymond, Jean-Louis Retrosynthetic accessibility score (RAscore) – rapid machine learned synthesizability classification from AI driven retrosynthetic planning |
title | Retrosynthetic accessibility score (RAscore) – rapid machine learned synthesizability classification from AI driven retrosynthetic planning |
title_full | Retrosynthetic accessibility score (RAscore) – rapid machine learned synthesizability classification from AI driven retrosynthetic planning |
title_fullStr | Retrosynthetic accessibility score (RAscore) – rapid machine learned synthesizability classification from AI driven retrosynthetic planning |
title_full_unstemmed | Retrosynthetic accessibility score (RAscore) – rapid machine learned synthesizability classification from AI driven retrosynthetic planning |
title_short | Retrosynthetic accessibility score (RAscore) – rapid machine learned synthesizability classification from AI driven retrosynthetic planning |
title_sort | retrosynthetic accessibility score (rascore) – rapid machine learned synthesizability classification from ai driven retrosynthetic planning |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8179384/ https://www.ncbi.nlm.nih.gov/pubmed/34164104 http://dx.doi.org/10.1039/d0sc05401a |
work_keys_str_mv | AT thakkaramol retrosyntheticaccessibilityscorerascorerapidmachinelearnedsynthesizabilityclassificationfromaidrivenretrosyntheticplanning AT chadimovaveronika retrosyntheticaccessibilityscorerascorerapidmachinelearnedsynthesizabilityclassificationfromaidrivenretrosyntheticplanning AT bjerrumesbenjannik retrosyntheticaccessibilityscorerascorerapidmachinelearnedsynthesizabilityclassificationfromaidrivenretrosyntheticplanning AT engkvistola retrosyntheticaccessibilityscorerascorerapidmachinelearnedsynthesizabilityclassificationfromaidrivenretrosyntheticplanning AT reymondjeanlouis retrosyntheticaccessibilityscorerascorerapidmachinelearnedsynthesizabilityclassificationfromaidrivenretrosyntheticplanning |