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On the use of catalysis to bias reaction pathways in out-of-equilibrium systems

Catalysis is an essential function in living systems and provides a way to control complex reaction networks. In natural out-of-equilibrium chemical reaction networks (CRNs) driven by the consumption of chemical fuels, enzymes provide catalytic control over pathway kinetics, giving rise to complex f...

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Autores principales: van der Helm, Michelle P., de Beun, Tuanke, Eelkema, Rienk
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8179475/
https://www.ncbi.nlm.nih.gov/pubmed/34163713
http://dx.doi.org/10.1039/d0sc06406h
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author van der Helm, Michelle P.
de Beun, Tuanke
Eelkema, Rienk
author_facet van der Helm, Michelle P.
de Beun, Tuanke
Eelkema, Rienk
author_sort van der Helm, Michelle P.
collection PubMed
description Catalysis is an essential function in living systems and provides a way to control complex reaction networks. In natural out-of-equilibrium chemical reaction networks (CRNs) driven by the consumption of chemical fuels, enzymes provide catalytic control over pathway kinetics, giving rise to complex functions. Catalytic regulation of man-made fuel-driven systems is far less common and mostly deals with enzyme catalysis instead of synthetic catalysts. Here, we show via simulations, illustrated by literature examples, how any catalyst can be incorporated in a non-equilibrium CRN and what their effect is on the behavior of the system. Alteration of the catalysts' concentrations in batch and flow gives rise to responses in maximum conversion, lifetime (i.e. product half-lives and t90 – time to recover 90% of the reactant) and steady states. In situ up or downregulation of catalysts' levels temporarily changes the product steady state, whereas feedback elements can give unusual concentration profiles as a function of time and self-regulation in a CRN. We show that simulations can be highly effective in predicting CRN behavior. In the future, shifting the focus from enzyme catalysis towards small molecule and metal catalysis in out-of-equilibrium systems can provide us with new reaction networks and enhance their application potential in synthetic materials, overall advancing the design of man-made responsive and interactive systems.
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spelling pubmed-81794752021-06-22 On the use of catalysis to bias reaction pathways in out-of-equilibrium systems van der Helm, Michelle P. de Beun, Tuanke Eelkema, Rienk Chem Sci Chemistry Catalysis is an essential function in living systems and provides a way to control complex reaction networks. In natural out-of-equilibrium chemical reaction networks (CRNs) driven by the consumption of chemical fuels, enzymes provide catalytic control over pathway kinetics, giving rise to complex functions. Catalytic regulation of man-made fuel-driven systems is far less common and mostly deals with enzyme catalysis instead of synthetic catalysts. Here, we show via simulations, illustrated by literature examples, how any catalyst can be incorporated in a non-equilibrium CRN and what their effect is on the behavior of the system. Alteration of the catalysts' concentrations in batch and flow gives rise to responses in maximum conversion, lifetime (i.e. product half-lives and t90 – time to recover 90% of the reactant) and steady states. In situ up or downregulation of catalysts' levels temporarily changes the product steady state, whereas feedback elements can give unusual concentration profiles as a function of time and self-regulation in a CRN. We show that simulations can be highly effective in predicting CRN behavior. In the future, shifting the focus from enzyme catalysis towards small molecule and metal catalysis in out-of-equilibrium systems can provide us with new reaction networks and enhance their application potential in synthetic materials, overall advancing the design of man-made responsive and interactive systems. The Royal Society of Chemistry 2021-02-09 /pmc/articles/PMC8179475/ /pubmed/34163713 http://dx.doi.org/10.1039/d0sc06406h Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
van der Helm, Michelle P.
de Beun, Tuanke
Eelkema, Rienk
On the use of catalysis to bias reaction pathways in out-of-equilibrium systems
title On the use of catalysis to bias reaction pathways in out-of-equilibrium systems
title_full On the use of catalysis to bias reaction pathways in out-of-equilibrium systems
title_fullStr On the use of catalysis to bias reaction pathways in out-of-equilibrium systems
title_full_unstemmed On the use of catalysis to bias reaction pathways in out-of-equilibrium systems
title_short On the use of catalysis to bias reaction pathways in out-of-equilibrium systems
title_sort on the use of catalysis to bias reaction pathways in out-of-equilibrium systems
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8179475/
https://www.ncbi.nlm.nih.gov/pubmed/34163713
http://dx.doi.org/10.1039/d0sc06406h
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