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Circ-RNA Expression Pattern and circ-RNA-miRNA-mRNA Network in The Pathogenesis of Human Intervertebral Disc Degeneration
OBJECTIVE: The present study aimed to screen the differentially expressed (DE) circular RNAs (circ-RNAs) between lumbar intervertebral disc degeneration (IVDD) and normal tissues. MATERIAL AND METHODS: In this experimental study, microarray hybridization was performed to evaluate circ-RNA expression...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Royan Institute
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8181320/ https://www.ncbi.nlm.nih.gov/pubmed/34096223 http://dx.doi.org/10.22074/cellj.2021.6832 |
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author | Guo, Zhiliang Liu, Yuanyuan Gao, Yu Guan, Xiumei Li, Hong Cheng, Min |
author_facet | Guo, Zhiliang Liu, Yuanyuan Gao, Yu Guan, Xiumei Li, Hong Cheng, Min |
author_sort | Guo, Zhiliang |
collection | PubMed |
description | OBJECTIVE: The present study aimed to screen the differentially expressed (DE) circular RNAs (circ-RNAs) between lumbar intervertebral disc degeneration (IVDD) and normal tissues. MATERIAL AND METHODS: In this experimental study, microarray hybridization was performed to evaluate circ-RNA expression, and the DE circ-RNAs were confirmed by quantitative real-time polymerase chain reaction (qRT-PCR). Host genes of DE circ-RNAs were predicted, and their functions were evaluated. Further, a competitive endogenesis (ce) RNA network among 4 DE circ-RNAs-miRNA-mRNA was constructed by Cytoscape. RESULTS: A total of 2636 circ-RNAs were detected in all samples; among them, 89.23% were exonic circ-RNAs. There were 138 DE circ-RNAs, including 134 up-regulated circ-RNAs and 4 downregulated circ-RNAs in IVDD samples. qRT-PCR validation experiments showed that expression trends of hsa_circ_0003239, hsa_circ_0003162, hsa_circ_0005918, and hsa_circ_0005556 were in line with the microarray analysis results. Functional enrichment analysis showed that host genes of DE circ-RNAs significantly disturbed pathways of regulation of actin cytoskeleton, propanoate metabolism, and ErbB signaling pathway. The four DE circ-RNAs related ceRNA network was constructed. CONCLUSIONS: Our results revealed that circ-RNAs can function as miRNA sponges and regulate parent gene expression to affect IVDD. |
format | Online Article Text |
id | pubmed-8181320 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Royan Institute |
record_format | MEDLINE/PubMed |
spelling | pubmed-81813202021-07-01 Circ-RNA Expression Pattern and circ-RNA-miRNA-mRNA Network in The Pathogenesis of Human Intervertebral Disc Degeneration Guo, Zhiliang Liu, Yuanyuan Gao, Yu Guan, Xiumei Li, Hong Cheng, Min Cell J Original Article OBJECTIVE: The present study aimed to screen the differentially expressed (DE) circular RNAs (circ-RNAs) between lumbar intervertebral disc degeneration (IVDD) and normal tissues. MATERIAL AND METHODS: In this experimental study, microarray hybridization was performed to evaluate circ-RNA expression, and the DE circ-RNAs were confirmed by quantitative real-time polymerase chain reaction (qRT-PCR). Host genes of DE circ-RNAs were predicted, and their functions were evaluated. Further, a competitive endogenesis (ce) RNA network among 4 DE circ-RNAs-miRNA-mRNA was constructed by Cytoscape. RESULTS: A total of 2636 circ-RNAs were detected in all samples; among them, 89.23% were exonic circ-RNAs. There were 138 DE circ-RNAs, including 134 up-regulated circ-RNAs and 4 downregulated circ-RNAs in IVDD samples. qRT-PCR validation experiments showed that expression trends of hsa_circ_0003239, hsa_circ_0003162, hsa_circ_0005918, and hsa_circ_0005556 were in line with the microarray analysis results. Functional enrichment analysis showed that host genes of DE circ-RNAs significantly disturbed pathways of regulation of actin cytoskeleton, propanoate metabolism, and ErbB signaling pathway. The four DE circ-RNAs related ceRNA network was constructed. CONCLUSIONS: Our results revealed that circ-RNAs can function as miRNA sponges and regulate parent gene expression to affect IVDD. Royan Institute 2021-07 2021-05-26 /pmc/articles/PMC8181320/ /pubmed/34096223 http://dx.doi.org/10.22074/cellj.2021.6832 Text en The Cell Journal (Yakhteh) is an open access journal which means the articles are freely available online for any individual author to download and use the providing address. The journal is licensed under a Creative Commons Attribution-Non Commercial 3.0 Unported License which allows the author(s) to hold the copyright without restrictions that is permitting unrestricted use, distribution, and reproduction in any medium provided the original work is properly cited. https://creativecommons.org/licenses/by/3.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Guo, Zhiliang Liu, Yuanyuan Gao, Yu Guan, Xiumei Li, Hong Cheng, Min Circ-RNA Expression Pattern and circ-RNA-miRNA-mRNA Network in The Pathogenesis of Human Intervertebral Disc Degeneration |
title | Circ-RNA Expression Pattern and circ-RNA-miRNA-mRNA
Network in The Pathogenesis of Human
Intervertebral Disc Degeneration |
title_full | Circ-RNA Expression Pattern and circ-RNA-miRNA-mRNA
Network in The Pathogenesis of Human
Intervertebral Disc Degeneration |
title_fullStr | Circ-RNA Expression Pattern and circ-RNA-miRNA-mRNA
Network in The Pathogenesis of Human
Intervertebral Disc Degeneration |
title_full_unstemmed | Circ-RNA Expression Pattern and circ-RNA-miRNA-mRNA
Network in The Pathogenesis of Human
Intervertebral Disc Degeneration |
title_short | Circ-RNA Expression Pattern and circ-RNA-miRNA-mRNA
Network in The Pathogenesis of Human
Intervertebral Disc Degeneration |
title_sort | circ-rna expression pattern and circ-rna-mirna-mrna
network in the pathogenesis of human
intervertebral disc degeneration |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8181320/ https://www.ncbi.nlm.nih.gov/pubmed/34096223 http://dx.doi.org/10.22074/cellj.2021.6832 |
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