Cargando…

Systematic Review on Local Ancestor Inference From a Mathematical and Algorithmic Perspective

Genotypic data provide deep insights into the population history and medical genetics. The local ancestry inference (LAI) (also termed local ancestry deconvolution) method uses the hidden Markov model (HMM) to solve the mathematical problem of ancestry reconstruction based on genomic data. HMM is co...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wu, Jie, Liu, Yangxiu, Zhao, Yiqiang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2021
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8181461/ https://www.ncbi.nlm.nih.gov/pubmed/34108987 http://dx.doi.org/10.3389/fgene.2021.639877

Ejemplares similares

Comparative Analysis of Genomic and Transcriptome Sequences Reveals Divergent Patterns of Codon Bias in Wheat and Its Ancestor Species
por: Yang, Chenkang, et al.
Publicado: (2021)

Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling
por: Van den Broeck, Lisa, et al.
Publicado: (2020)

Use of Laplacian Heat Diffusion Algorithm to Infer Novel Genes With Functions Related to Uveitis
por: Lu, Shiheng, et al.
Publicado: (2018)

Evaluation of Intestinal Permeability and Liver Bacterial Translocation in Two Modern Broilers and Their Jungle Fowl Ancestor
por: Baxter, Mikayla F. A., et al.
Publicado: (2019)

Evaluating the Reproducibility of Single-Cell Gene Regulatory Network Inference Algorithms
por: Kang, Yoonjee, et al.
Publicado: (2021)

RWRNET: A Gene Regulatory Network Inference Algorithm Using Random Walk With Restart
por: Liu, Wei, et al.
Publicado: (2020)

Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration
por: Gavryushkina, Alexandra, et al.
Publicado: (2014)

Experimental assessment of static and dynamic algorithms for gene regulation inference from time series expression data
por: Lopes, Miguel, et al.
Publicado: (2013)

Spatial Localization of Recent Ancestors for Admixed Individuals
por: Yang, Wen-Yun, et al.
Publicado: (2014)

IAGS: Inferring Ancestor Genome Structure under a Wide Range of Evolutionary Scenarios
por: Gao, Shenghan, et al.
Publicado: (2022)

Learning from ancestors
por: Hong, Suk ho, et al.
Publicado: (2019)

Inferring Latent Disease-lncRNA Associations by Label-Propagation Algorithm and Random Projection on a Heterogeneous Network
por: Chen, Min, et al.
Publicado: (2022)

A Systematic Way to Infer the Regulation Relations of miRNAs on Target Genes and Critical miRNAs in Cancers
por: Xu, Peng, et al.
Publicado: (2020)

High Genetic Diversity but Absence of Population Structure in Local Chickens of Sri Lanka Inferred by Microsatellite Markers
por: Samaraweera, Amali Malshani, et al.
Publicado: (2021)

The Distributions and Boundary of Two Distinct, Local Forms of Japanese Pond Frog, Pelophylax porosus brevipodus, Inferred From Sequences of Mitochondrial DNA
por: Nagai, Yukari, et al.
Publicado: (2018)

Baboon perspectives on the ecology and behavior of early human ancestors
por: King, Glenn E.
Publicado: (2022)

Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors
por: Kepler, Thomas B
Publicado: (2013)

Adam's Ancestors
por: Burr, H. S.
Publicado: (1935)

Mitochondrial genome nucleotide substitution pattern between domesticated silkmoth, Bombyx mori, and its wild ancestors, Chinese Bombyx mandarina and Japanese Bombyx mandarina
por: Li, Yu-Ping, et al.
Publicado: (2010)

Causal Inference of Genetic Variants and Genes in Amyotrophic Lateral Sclerosis
por: Pan, Siyu, et al.
Publicado: (2022)

Inferring Interaction Networks From Multi-Omics Data
por: Hawe, Johann S., et al.
Publicado: (2019)

Comprehensive Review of Models and Methods for Inferences in Bio-Chemical Reaction Networks
por: Loskot, Pavel, et al.
Publicado: (2019)

Inferring Differential Networks by Integrating Gene Expression Data With Additional Knowledge
por: Liu, Chen, et al.
Publicado: (2021)

Inferring ancestry from population genomic data and its applications
por: Padhukasahasram, Badri
Publicado: (2014)

Inference of a Boolean Network From Causal Logic Implications
por: Maheshwari, Parul, et al.
Publicado: (2022)

Predicting Functional Effects of Synonymous Variants: A Systematic Review and Perspectives
por: Zeng, Zishuo, et al.
Publicado: (2019)

Accurate Inference of Tumor Purity and Absolute Copy Numbers From High-Throughput Sequencing Data
por: Yuan, Xiguo, et al.
Publicado: (2020)

Inferring Regulatory Networks From Mixed Observational Data Using Directed Acyclic Graphs
por: Zhong, Wujuan, et al.
Publicado: (2020)

DINTD: Detection and Inference of Tandem Duplications From Short Sequencing Reads
por: Dong, Jinxin, et al.
Publicado: (2020)

Origin and Demographic History of Philippine Pigs Inferred from Mitochondrial DNA
por: Layos, John King N., et al.
Publicado: (2022)

Inference of gene-environment interaction from heterogeneous case-parent trios
por: Ratnasekera, Pulindu, et al.
Publicado: (2023)

Review the progression of ovarian clear cell carcinoma from the perspective of genomics and epigenomics
por: Tong, An, et al.
Publicado: (2023)

Inference of Genetic Networks From Time-Series and Static Gene Expression Data: Combining a Random-Forest-Based Inference Method With Feature Selection Methods
por: Kimura, Shuhei, et al.
Publicado: (2020)

Systematic Selection of Age-Associated mRNA Markers and the Development of Predicted Models for Forensic Age Inference by Three Machine Learning Methods
por: Jin, Xiaoye, et al.
Publicado: (2022)

A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes
por: Csuros, Miklos, et al.
Publicado: (2011)

The (Mathematical) Modeling Process in Biosciences
por: Torres, Nestor V., et al.
Publicado: (2015)

Mathematical Approaches of Branching Morphogenesis
por: Lang, Christine, et al.
Publicado: (2018)

Mathematical Models of Organoid Cultures
por: Montes-Olivas, Sandra, et al.
Publicado: (2019)

link-ancestors: fast simulation of local ancestry with tree sequence software
por: Tsambos, Georgia, et al.
Publicado: (2023)

Sunflower Genetics from Ancestors to Modern Hybrids—A Review
por: Radanović, Aleksandra, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_fe2ph6n97in71dj2ed3veik7r8