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The complete chloroplast genome of Chimonobambusa hejiangensis
Chimonobambusa hejiangensis is of the unique edible bamboo specie of high quality in China. We studied the complete chloroplast(cp) genome of C. purpurea in this study. The cp genome of C. hejiangensis (GenBank accession: MW186792) was 138,911 bp in length, including a large single-copy (LSC) region...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8183503/ https://www.ncbi.nlm.nih.gov/pubmed/34124356 http://dx.doi.org/10.1080/23802359.2021.1930599 |
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author | Liu, Yun-Ke Liu, Wei Xiao, Qian-Gang Zeng, Zhen Zhuang, Li Zhang, Ting-Hao Zhang, Jun Huang, Qian-Ying Wang, Bao-Xin |
author_facet | Liu, Yun-Ke Liu, Wei Xiao, Qian-Gang Zeng, Zhen Zhuang, Li Zhang, Ting-Hao Zhang, Jun Huang, Qian-Ying Wang, Bao-Xin |
author_sort | Liu, Yun-Ke |
collection | PubMed |
description | Chimonobambusa hejiangensis is of the unique edible bamboo specie of high quality in China. We studied the complete chloroplast(cp) genome of C. purpurea in this study. The cp genome of C. hejiangensis (GenBank accession: MW186792) was 138,911 bp in length, including a large single-copy (LSC) region of 82,498 bp, a small single-copy (SSC) region of 12,743 bp and a pair of inverted repeated (IR) regions of 21,835 bp. The genome contained 133 genes, including 86 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. Based on 39 cp genomes, we used the phylogenetic analysis to build phylogenetic tree, indicating that C. hejiangensis is closely related to C. tumidissinoda. Also, the phylogenetic relationship of lineages might be (Hsuehochloa + (((Shibataea clade + Arundinaria clade) + Indocalamus wilsonii) + ((Bergbambos + Indocalamus) + (((African alpine bamboos + Gaoligongshania) + (Chimonocalamus + Kuruna))+(Thamnocalamus + Phyllostachys clade))))). It could be devoted to phylogenetic analysis of Arundinarieae. |
format | Online Article Text |
id | pubmed-8183503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-81835032021-06-11 The complete chloroplast genome of Chimonobambusa hejiangensis Liu, Yun-Ke Liu, Wei Xiao, Qian-Gang Zeng, Zhen Zhuang, Li Zhang, Ting-Hao Zhang, Jun Huang, Qian-Ying Wang, Bao-Xin Mitochondrial DNA B Resour Mitogenome Announcement Chimonobambusa hejiangensis is of the unique edible bamboo specie of high quality in China. We studied the complete chloroplast(cp) genome of C. purpurea in this study. The cp genome of C. hejiangensis (GenBank accession: MW186792) was 138,911 bp in length, including a large single-copy (LSC) region of 82,498 bp, a small single-copy (SSC) region of 12,743 bp and a pair of inverted repeated (IR) regions of 21,835 bp. The genome contained 133 genes, including 86 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. Based on 39 cp genomes, we used the phylogenetic analysis to build phylogenetic tree, indicating that C. hejiangensis is closely related to C. tumidissinoda. Also, the phylogenetic relationship of lineages might be (Hsuehochloa + (((Shibataea clade + Arundinaria clade) + Indocalamus wilsonii) + ((Bergbambos + Indocalamus) + (((African alpine bamboos + Gaoligongshania) + (Chimonocalamus + Kuruna))+(Thamnocalamus + Phyllostachys clade))))). It could be devoted to phylogenetic analysis of Arundinarieae. Taylor & Francis 2021-06-03 /pmc/articles/PMC8183503/ /pubmed/34124356 http://dx.doi.org/10.1080/23802359.2021.1930599 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Liu, Yun-Ke Liu, Wei Xiao, Qian-Gang Zeng, Zhen Zhuang, Li Zhang, Ting-Hao Zhang, Jun Huang, Qian-Ying Wang, Bao-Xin The complete chloroplast genome of Chimonobambusa hejiangensis |
title | The complete chloroplast genome of Chimonobambusa hejiangensis |
title_full | The complete chloroplast genome of Chimonobambusa hejiangensis |
title_fullStr | The complete chloroplast genome of Chimonobambusa hejiangensis |
title_full_unstemmed | The complete chloroplast genome of Chimonobambusa hejiangensis |
title_short | The complete chloroplast genome of Chimonobambusa hejiangensis |
title_sort | complete chloroplast genome of chimonobambusa hejiangensis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8183503/ https://www.ncbi.nlm.nih.gov/pubmed/34124356 http://dx.doi.org/10.1080/23802359.2021.1930599 |
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