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The complete chloroplast genome of Chimonobambusa hejiangensis

Chimonobambusa hejiangensis is of the unique edible bamboo specie of high quality in China. We studied the complete chloroplast(cp) genome of C. purpurea in this study. The cp genome of C. hejiangensis (GenBank accession: MW186792) was 138,911 bp in length, including a large single-copy (LSC) region...

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Autores principales: Liu, Yun-Ke, Liu, Wei, Xiao, Qian-Gang, Zeng, Zhen, Zhuang, Li, Zhang, Ting-Hao, Zhang, Jun, Huang, Qian-Ying, Wang, Bao-Xin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8183503/
https://www.ncbi.nlm.nih.gov/pubmed/34124356
http://dx.doi.org/10.1080/23802359.2021.1930599
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author Liu, Yun-Ke
Liu, Wei
Xiao, Qian-Gang
Zeng, Zhen
Zhuang, Li
Zhang, Ting-Hao
Zhang, Jun
Huang, Qian-Ying
Wang, Bao-Xin
author_facet Liu, Yun-Ke
Liu, Wei
Xiao, Qian-Gang
Zeng, Zhen
Zhuang, Li
Zhang, Ting-Hao
Zhang, Jun
Huang, Qian-Ying
Wang, Bao-Xin
author_sort Liu, Yun-Ke
collection PubMed
description Chimonobambusa hejiangensis is of the unique edible bamboo specie of high quality in China. We studied the complete chloroplast(cp) genome of C. purpurea in this study. The cp genome of C. hejiangensis (GenBank accession: MW186792) was 138,911 bp in length, including a large single-copy (LSC) region of 82,498 bp, a small single-copy (SSC) region of 12,743 bp and a pair of inverted repeated (IR) regions of 21,835 bp. The genome contained 133 genes, including 86 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. Based on 39 cp genomes, we used the phylogenetic analysis to build phylogenetic tree, indicating that C. hejiangensis is closely related to C. tumidissinoda. Also, the phylogenetic relationship of lineages might be (Hsuehochloa + (((Shibataea clade + Arundinaria clade) + Indocalamus wilsonii) + ((Bergbambos + Indocalamus) + (((African alpine bamboos + Gaoligongshania) + (Chimonocalamus + Kuruna))+(Thamnocalamus + Phyllostachys clade))))). It could be devoted to phylogenetic analysis of Arundinarieae.
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spelling pubmed-81835032021-06-11 The complete chloroplast genome of Chimonobambusa hejiangensis Liu, Yun-Ke Liu, Wei Xiao, Qian-Gang Zeng, Zhen Zhuang, Li Zhang, Ting-Hao Zhang, Jun Huang, Qian-Ying Wang, Bao-Xin Mitochondrial DNA B Resour Mitogenome Announcement Chimonobambusa hejiangensis is of the unique edible bamboo specie of high quality in China. We studied the complete chloroplast(cp) genome of C. purpurea in this study. The cp genome of C. hejiangensis (GenBank accession: MW186792) was 138,911 bp in length, including a large single-copy (LSC) region of 82,498 bp, a small single-copy (SSC) region of 12,743 bp and a pair of inverted repeated (IR) regions of 21,835 bp. The genome contained 133 genes, including 86 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. Based on 39 cp genomes, we used the phylogenetic analysis to build phylogenetic tree, indicating that C. hejiangensis is closely related to C. tumidissinoda. Also, the phylogenetic relationship of lineages might be (Hsuehochloa + (((Shibataea clade + Arundinaria clade) + Indocalamus wilsonii) + ((Bergbambos + Indocalamus) + (((African alpine bamboos + Gaoligongshania) + (Chimonocalamus + Kuruna))+(Thamnocalamus + Phyllostachys clade))))). It could be devoted to phylogenetic analysis of Arundinarieae. Taylor & Francis 2021-06-03 /pmc/articles/PMC8183503/ /pubmed/34124356 http://dx.doi.org/10.1080/23802359.2021.1930599 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Yun-Ke
Liu, Wei
Xiao, Qian-Gang
Zeng, Zhen
Zhuang, Li
Zhang, Ting-Hao
Zhang, Jun
Huang, Qian-Ying
Wang, Bao-Xin
The complete chloroplast genome of Chimonobambusa hejiangensis
title The complete chloroplast genome of Chimonobambusa hejiangensis
title_full The complete chloroplast genome of Chimonobambusa hejiangensis
title_fullStr The complete chloroplast genome of Chimonobambusa hejiangensis
title_full_unstemmed The complete chloroplast genome of Chimonobambusa hejiangensis
title_short The complete chloroplast genome of Chimonobambusa hejiangensis
title_sort complete chloroplast genome of chimonobambusa hejiangensis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8183503/
https://www.ncbi.nlm.nih.gov/pubmed/34124356
http://dx.doi.org/10.1080/23802359.2021.1930599
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