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Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform

The Pacific limpet Cellana nigrolineata is one of the most commonly found limpets in the intertidal shores of Japan. Here, we report the full mitogenome sequence of an individual specimen of the species, which was collected from the intertidal rocky beach in the Nada beach of Gobo City, Wakayama, Ja...

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Autores principales: Nakashima, Satoko, Shimizu, Moe, Hirota, Kazuki, Hiruta, Shimpei F., Nagisa, Nakaji, Fujita, Toshihiko, Sasaki, Takenori, Setiamarga, Davin H. E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8183504/
https://www.ncbi.nlm.nih.gov/pubmed/34124369
http://dx.doi.org/10.1080/23802359.2021.1934579
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author Nakashima, Satoko
Shimizu, Moe
Hirota, Kazuki
Hiruta, Shimpei F.
Nagisa, Nakaji
Fujita, Toshihiko
Sasaki, Takenori
Setiamarga, Davin H. E.
author_facet Nakashima, Satoko
Shimizu, Moe
Hirota, Kazuki
Hiruta, Shimpei F.
Nagisa, Nakaji
Fujita, Toshihiko
Sasaki, Takenori
Setiamarga, Davin H. E.
author_sort Nakashima, Satoko
collection PubMed
description The Pacific limpet Cellana nigrolineata is one of the most commonly found limpets in the intertidal shores of Japan. Here, we report the full mitogenome sequence of an individual specimen of the species, which was collected from the intertidal rocky beach in the Nada beach of Gobo City, Wakayama, Japan (33.8316 N, 135.1751 E), in 2018. The sequence was determined by the shotgun sequencing method using the NGS Illumina MiSeq platform. The genomic structure of C. nigrolineata is the same as the previously reported congener, C. radiata, which shows a representative Nacellidae and metazoan mitogenomic structures. The mitogenome has all of its 37 genes included in its 16,153 bp, with one control region located between the tRNA-Cys and tRNA-Gly genes. In order to clarify the phylogenetic position of C. nigrolineata in Gastropoda, a data set including the mitogenomes of 10 patellogastropods, 10 non-patellogastropod gastropods, and four outgroups were used in maximum likelihood inferences. Although with some exceptions, the resulting phylogeny supported the monophylies of traditionally accepted gastropod subclasses, and thus confirms the position of C. nigrolineata in Patellogastropoda.
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spelling pubmed-81835042021-06-11 Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform Nakashima, Satoko Shimizu, Moe Hirota, Kazuki Hiruta, Shimpei F. Nagisa, Nakaji Fujita, Toshihiko Sasaki, Takenori Setiamarga, Davin H. E. Mitochondrial DNA B Resour Mitogenome Announcement The Pacific limpet Cellana nigrolineata is one of the most commonly found limpets in the intertidal shores of Japan. Here, we report the full mitogenome sequence of an individual specimen of the species, which was collected from the intertidal rocky beach in the Nada beach of Gobo City, Wakayama, Japan (33.8316 N, 135.1751 E), in 2018. The sequence was determined by the shotgun sequencing method using the NGS Illumina MiSeq platform. The genomic structure of C. nigrolineata is the same as the previously reported congener, C. radiata, which shows a representative Nacellidae and metazoan mitogenomic structures. The mitogenome has all of its 37 genes included in its 16,153 bp, with one control region located between the tRNA-Cys and tRNA-Gly genes. In order to clarify the phylogenetic position of C. nigrolineata in Gastropoda, a data set including the mitogenomes of 10 patellogastropods, 10 non-patellogastropod gastropods, and four outgroups were used in maximum likelihood inferences. Although with some exceptions, the resulting phylogeny supported the monophylies of traditionally accepted gastropod subclasses, and thus confirms the position of C. nigrolineata in Patellogastropoda. Taylor & Francis 2021-06-03 /pmc/articles/PMC8183504/ /pubmed/34124369 http://dx.doi.org/10.1080/23802359.2021.1934579 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Nakashima, Satoko
Shimizu, Moe
Hirota, Kazuki
Hiruta, Shimpei F.
Nagisa, Nakaji
Fujita, Toshihiko
Sasaki, Takenori
Setiamarga, Davin H. E.
Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform
title Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform
title_full Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform
title_fullStr Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform
title_full_unstemmed Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform
title_short Complete mitochondrial genome of the Pacific limpet Cellana nigrolineata (Gastropoda: Patellogastropoda) determined by shotgun sequencing using the Illumina NGS platform
title_sort complete mitochondrial genome of the pacific limpet cellana nigrolineata (gastropoda: patellogastropoda) determined by shotgun sequencing using the illumina ngs platform
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8183504/
https://www.ncbi.nlm.nih.gov/pubmed/34124369
http://dx.doi.org/10.1080/23802359.2021.1934579
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