Complete chloroplast genome of Alternanthera philoxeroides by de novo sequencing

Alternanthera philoxeroides (Mart.) Griseb. (Alternanthera philoxeroides) is an important herbage species, which could provide high-quality feed for livestock and poultry breeding. This paper is the first to report the A. philoxeroides’s chloroplast genomes, which were detected by de novo sequencing...

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Autores principales: Jiang, Ping, Xu, Guangpei, He, Yanfei, Sun, Taotao, Liu, Changli, Chen, Cunwu, Zuo, Ruihua, Sun, Chuanbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8183559/
https://www.ncbi.nlm.nih.gov/pubmed/34124357
http://dx.doi.org/10.1080/23802359.2021.1931512
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author Jiang, Ping
Xu, Guangpei
He, Yanfei
Sun, Taotao
Liu, Changli
Chen, Cunwu
Zuo, Ruihua
Sun, Chuanbo
author_facet Jiang, Ping
Xu, Guangpei
He, Yanfei
Sun, Taotao
Liu, Changli
Chen, Cunwu
Zuo, Ruihua
Sun, Chuanbo
author_sort Jiang, Ping
collection PubMed
description Alternanthera philoxeroides (Mart.) Griseb. (Alternanthera philoxeroides) is an important herbage species, which could provide high-quality feed for livestock and poultry breeding. This paper is the first to report the A. philoxeroides’s chloroplast genomes, which were detected by de novo sequencing. The results showed that the length of A. philoxeroides’ chloroplast genome sequence was 152,255 bp, including a large single-copy (LSC) region (84,670 bp), a small single-copy (SSC) region (17,343 bp), and two inverted repeat (IR) regions (25,121 bp). Alternanthera philoxeroides’ chloroplast genome encoded 132 genes including 8 rRNA, 38 tRNA, and 86 protein-coding genes. After phylogenetic and cluster analysis, A. philoxeroides was closest to Amaranthaceae, and the relationship between Amaranthus and Achyranthes was closest.
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spelling pubmed-81835592021-06-11 Complete chloroplast genome of Alternanthera philoxeroides by de novo sequencing Jiang, Ping Xu, Guangpei He, Yanfei Sun, Taotao Liu, Changli Chen, Cunwu Zuo, Ruihua Sun, Chuanbo Mitochondrial DNA B Resour Mitogenome Announcement Alternanthera philoxeroides (Mart.) Griseb. (Alternanthera philoxeroides) is an important herbage species, which could provide high-quality feed for livestock and poultry breeding. This paper is the first to report the A. philoxeroides’s chloroplast genomes, which were detected by de novo sequencing. The results showed that the length of A. philoxeroides’ chloroplast genome sequence was 152,255 bp, including a large single-copy (LSC) region (84,670 bp), a small single-copy (SSC) region (17,343 bp), and two inverted repeat (IR) regions (25,121 bp). Alternanthera philoxeroides’ chloroplast genome encoded 132 genes including 8 rRNA, 38 tRNA, and 86 protein-coding genes. After phylogenetic and cluster analysis, A. philoxeroides was closest to Amaranthaceae, and the relationship between Amaranthus and Achyranthes was closest. Taylor & Francis 2021-06-04 /pmc/articles/PMC8183559/ /pubmed/34124357 http://dx.doi.org/10.1080/23802359.2021.1931512 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Jiang, Ping
Xu, Guangpei
He, Yanfei
Sun, Taotao
Liu, Changli
Chen, Cunwu
Zuo, Ruihua
Sun, Chuanbo
Complete chloroplast genome of Alternanthera philoxeroides by de novo sequencing
title Complete chloroplast genome of Alternanthera philoxeroides by de novo sequencing
title_full Complete chloroplast genome of Alternanthera philoxeroides by de novo sequencing
title_fullStr Complete chloroplast genome of Alternanthera philoxeroides by de novo sequencing
title_full_unstemmed Complete chloroplast genome of Alternanthera philoxeroides by de novo sequencing
title_short Complete chloroplast genome of Alternanthera philoxeroides by de novo sequencing
title_sort complete chloroplast genome of alternanthera philoxeroides by de novo sequencing
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8183559/
https://www.ncbi.nlm.nih.gov/pubmed/34124357
http://dx.doi.org/10.1080/23802359.2021.1931512
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