Cargando…

The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle

BACKGROUND: Circadian gene expression is essential for organisms to adjust their physiology and anticipate daily changes in the environment. The molecular mechanisms controlling circadian gene transcription are still under investigation. In particular, how chromatin conformation at different genomic...

Descripción completa

Detalles Bibliográficos
Autores principales:	Furlan-Magaril, Mayra, Ando-Kuri, Masami, Arzate-Mejía, Rodrigo G., Morf, Jörg, Cairns, Jonathan, Román-Figueroa, Abraham, Tenorio-Hernández, Luis, Poot-Hernández, A. César, Andrews, Simon, Várnai, Csilla, Virk, Boo, Wingett, Steven W., Fraser, Peter
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8185950/ https://www.ncbi.nlm.nih.gov/pubmed/34099014 http://dx.doi.org/10.1186/s13059-021-02374-3

Ejemplares similares

Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells
por: Freire-Pritchett, Paula, et al.
Publicado: (2017)

In situ dissection of domain boundaries affect genome topology and gene transcription in Drosophila
por: Arzate-Mejía, Rodrigo G., et al.
Publicado: (2020)

Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions
por: Schoenfelder, Stefan, et al.
Publicado: (2018)

HiCUP: pipeline for mapping and processing Hi-C data
por: Wingett, Steven, et al.
Publicado: (2015)

Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition
por: Novo, Clara Lopes, et al.
Publicado: (2018)

Heterochromatin as an Important Driver of Genome Organization
por: Penagos-Puig, Andrés, et al.
Publicado: (2020)

Chromosome conformation capture technologies as tools to detect structural variations and their repercussion in chromatin 3D configuration
por: Stephenson-Gussinye, Aura, et al.
Publicado: (2023)

Editorial: Chromatin Spatial Configuration and Function in Metazoans
por: Delgado-Olguín, Paul, et al.
Publicado: (2021)

Global Reorganization of the Nuclear Landscape in Senescent Cells
por: Chandra, Tamir, et al.
Publicado: (2015)

Comparison of Hi-C results using in-solution versus in-nucleus ligation
por: Nagano, Takashi, et al.
Publicado: (2015)

Body temperature cycles: Gatekeepers of circadian clocks
por: Morf, Jörg, et al.
Publicado: (2013)

RNA proximity sequencing data and analysis pipeline from a human neuroblastoma nuclear transcriptome
por: Wingett, Steven W., et al.
Publicado: (2020)

IsoformResolver: A Peptide-Centric Algorithm for Protein Inference
por: Meyer-Arendt, Karen, et al.
Publicado: (2011)

Mechanism of the Neurospora Circadian Clock, a FREQUENCY-centric View
por: Cha, Joonseok, et al.
Publicado: (2014)

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
por: Cairns, Jonathan, et al.
Publicado: (2016)

Tracking end-of-life stage of chemicals: A scalable data-centric and chemical-centric approach
por: Hernandez-Betancur, Jose D., et al.
Publicado: (2023)

Gain of DNA methylation is enhanced in the absence of CTCF at the human retinoblastoma gene promoter
por: Dávalos-Salas, Mercedes, et al.
Publicado: (2011)

An insulator embedded in the chicken α-globin locus regulates chromatin domain configuration and differential gene expression
por: Furlan-Magaril, Mayra, et al.
Publicado: (2011)

Resolving the Heterogeneous Tumor-Centric Cellular Neighborhood through Multiplexed, Spatial Paracrine Interactions in the Setting of Immune Checkpoint Blockade
por: Maus, Rachel L.G., et al.
Publicado: (2022)

Efficient Parameter Estimation of Generalizable Coarse-Grained Protein Force Fields Using Contrastive Divergence: A Maximum Likelihood Approach
por: Várnai, Csilla, et al.
Publicado: (2013)

Improving protein-protein interaction prediction using evolutionary information from low-quality MSAs
por: Várnai, Csilla, et al.
Publicado: (2017)

Customer Centricity in Medical Affairs Needs Human-centric Artificial Intelligence
por: Bedenkov, Alexander, et al.
Publicado: (2021)

People-Centric Skills
por: Goldberg, Danny
Publicado: (2020)

The Experience-Centric Organization
por: Clatworthy, Simon
Publicado: (2019)

I-centric Communications
por: Arbanowski, S, et al.
Publicado: (2001)

User-centric Design
por: Fuchs, Andreas
Publicado: (2020)

Comparison of Program-centric vs Student-centric National Resident Matching Algorithms
por: Mascarenhas, Briance, et al.
Publicado: (2021)

Towards a Better Performance in Facial Expression Recognition: A Data-Centric Approach
por: Mejia-Escobar, Christian, et al.
Publicado: (2023)

Epigenetic Inheritance: Impact for Biology and Society—recent progress, current questions and future challenges
por: Arzate-Mejía, Rodrigo G, et al.
Publicado: (2022)

Remembering through the genome: the role of chromatin states in brain functions and diseases
por: Arzate-Mejia, Rodrigo G., et al.
Publicado: (2023)

An Overview of the Circadian Clock in the Frame of Chronotherapy: From Bench to Bedside
por: Vandenberghe, Alan, et al.
Publicado: (2022)

Autonomous and self-sustained circadian oscillators displayed in human islet cells
por: Pulimeno, P., et al.
Publicado: (2012)

Data Centric Workflows for Crowdsourcing
por: Bourhis, Pierre, et al.
Publicado: (2020)

Patient Centric Care Management
por: Chao, Scumarry H.
Publicado: (2006)

Reporter pathway analysis from transcriptome data: Metabolite-centric versus Reaction-centric approach
por: Çakır, Tunahan
Publicado: (2015)

Integrating species-centric and geomorphic-centric views of interior least tern and piping plover habitat selection
por: Farnsworth, Jason M., et al.
Publicado: (2018)

Cave-Dwelling Fish Provide Clues to the Circadian Cycle
por: Mejia, Robin
Publicado: (2011)

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
por: Schoenfelder, Stefan, et al.
Publicado: (2015)

Allosteric mechanism of the circadian protein Vivid resolved through Markov state model and machine learning analysis
por: Zhou, Hongyu, et al.
Publicado: (2019)

Multiscale Time-resolved Analysis Reveals Remaining Behavioral Rhythms in Mice Without Canonical Circadian Clocks
por: Morris, Megan, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_nrgknr5k5i8ss8tv0a6lq1n6d1