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An immune-related model based on INHBA, JAG2 and CCL19 to predict the prognoses of colon cancer patients

BACKGROUND: Colorectal cancer (CRC) is the leading cause of cancer deaths and most common malignant tumors worldwide. Immune-related genes (IRGs) can predict prognoses of patients and the effects of immunotherapy. A series of colon cancer (CCa) samples from The Cancer Genome Atlas (TCGA) were analyz...

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Autores principales: Yang, Xuankun, Yan, Jia, Jiang, Yahui, Wang, Yaxu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8186192/
https://www.ncbi.nlm.nih.gov/pubmed/34103052
http://dx.doi.org/10.1186/s12935-021-02000-z
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author Yang, Xuankun
Yan, Jia
Jiang, Yahui
Wang, Yaxu
author_facet Yang, Xuankun
Yan, Jia
Jiang, Yahui
Wang, Yaxu
author_sort Yang, Xuankun
collection PubMed
description BACKGROUND: Colorectal cancer (CRC) is the leading cause of cancer deaths and most common malignant tumors worldwide. Immune-related genes (IRGs) can predict prognoses of patients and the effects of immunotherapy. A series of colon cancer (CCa) samples from The Cancer Genome Atlas (TCGA) were analyzed to provide a new perspective into this field. METHODS: Differential IRGs and IRGs with significant clinical outcomes (sIRGs) were calculated by the limma algorithm and univariate COX regression analysis. The potential molecular mechanisms of IRGs were detected by PPI, KEGG and GO analysis. Immune-related risk score model (IRRSM) was established based on multivariate COX regression analysis. Based on the median risk score of IRRSM, the high-risk group and low-risk group were distinguished. The expression levels of IHNBA and JAG2 and relationships between IHNBA and clinical features were verified by RT-qPCR. RESULTS: 6 differential sIRGs of patients with CCa were selected by univariate COX regression analysis. Based on the sIRGs (INHBA, JAG2 and CCL19), the IRRSM was established to predict survival probability of CCa patients and to explore the potential correlations with clinical features. Furthermore, IRRSM reflected the infiltration status of 22 types of immune cells. The expression levels of IHNBA and JAG2 were higher in CCa tissues than that in adjacent normal tissues. The expression levels of IHNBA and JAG2 were increased in advanced T stages. CONCLUSION: Our results illustrated that some sIRGs showed the latent value of predicting the prognoses of CCa patients and the clinical features. This study could provide a new insight for immune research and treatment strategies in CCa patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-021-02000-z.
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spelling pubmed-81861922021-06-10 An immune-related model based on INHBA, JAG2 and CCL19 to predict the prognoses of colon cancer patients Yang, Xuankun Yan, Jia Jiang, Yahui Wang, Yaxu Cancer Cell Int Primary Research BACKGROUND: Colorectal cancer (CRC) is the leading cause of cancer deaths and most common malignant tumors worldwide. Immune-related genes (IRGs) can predict prognoses of patients and the effects of immunotherapy. A series of colon cancer (CCa) samples from The Cancer Genome Atlas (TCGA) were analyzed to provide a new perspective into this field. METHODS: Differential IRGs and IRGs with significant clinical outcomes (sIRGs) were calculated by the limma algorithm and univariate COX regression analysis. The potential molecular mechanisms of IRGs were detected by PPI, KEGG and GO analysis. Immune-related risk score model (IRRSM) was established based on multivariate COX regression analysis. Based on the median risk score of IRRSM, the high-risk group and low-risk group were distinguished. The expression levels of IHNBA and JAG2 and relationships between IHNBA and clinical features were verified by RT-qPCR. RESULTS: 6 differential sIRGs of patients with CCa were selected by univariate COX regression analysis. Based on the sIRGs (INHBA, JAG2 and CCL19), the IRRSM was established to predict survival probability of CCa patients and to explore the potential correlations with clinical features. Furthermore, IRRSM reflected the infiltration status of 22 types of immune cells. The expression levels of IHNBA and JAG2 were higher in CCa tissues than that in adjacent normal tissues. The expression levels of IHNBA and JAG2 were increased in advanced T stages. CONCLUSION: Our results illustrated that some sIRGs showed the latent value of predicting the prognoses of CCa patients and the clinical features. This study could provide a new insight for immune research and treatment strategies in CCa patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-021-02000-z. BioMed Central 2021-06-08 /pmc/articles/PMC8186192/ /pubmed/34103052 http://dx.doi.org/10.1186/s12935-021-02000-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Primary Research
Yang, Xuankun
Yan, Jia
Jiang, Yahui
Wang, Yaxu
An immune-related model based on INHBA, JAG2 and CCL19 to predict the prognoses of colon cancer patients
title An immune-related model based on INHBA, JAG2 and CCL19 to predict the prognoses of colon cancer patients
title_full An immune-related model based on INHBA, JAG2 and CCL19 to predict the prognoses of colon cancer patients
title_fullStr An immune-related model based on INHBA, JAG2 and CCL19 to predict the prognoses of colon cancer patients
title_full_unstemmed An immune-related model based on INHBA, JAG2 and CCL19 to predict the prognoses of colon cancer patients
title_short An immune-related model based on INHBA, JAG2 and CCL19 to predict the prognoses of colon cancer patients
title_sort immune-related model based on inhba, jag2 and ccl19 to predict the prognoses of colon cancer patients
topic Primary Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8186192/
https://www.ncbi.nlm.nih.gov/pubmed/34103052
http://dx.doi.org/10.1186/s12935-021-02000-z
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