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Identification of genetic modifiers of lifespan on a high sugar diet in the Drosophila Genetic Reference Panel

Genome-wide association studies (GWAS) have become beneficial in identifying genetic variants underlying susceptibility to various complex diseases and conditions, including obesity. Utilizing the Drosophila Genetic Reference Panel (DGRP), we performed a GWAS of lifespan of 193 genetically distinct...

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Autores principales: Patel, Sumit P., Talbert, Matthew E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8187823/
https://www.ncbi.nlm.nih.gov/pubmed/34141921
http://dx.doi.org/10.1016/j.heliyon.2021.e07153
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author Patel, Sumit P.
Talbert, Matthew E.
author_facet Patel, Sumit P.
Talbert, Matthew E.
author_sort Patel, Sumit P.
collection PubMed
description Genome-wide association studies (GWAS) have become beneficial in identifying genetic variants underlying susceptibility to various complex diseases and conditions, including obesity. Utilizing the Drosophila Genetic Reference Panel (DGRP), we performed a GWAS of lifespan of 193 genetically distinct lines on a high sugar diet (HSD). The DGRP analysis pipeline determined the most significant lifespan associated polymorphisms were within loci of genes involved in: neural processes, behavior, development, and apoptosis, among other functions. Next, based on the relevance to obesity pathology, and the availability of transgenic RNAi lines targeting the genes we identified, whole-body in vivo knockdown of several candidate genes was performed. We utilized the GAL4-UAS binary expression system to independently validate the impacts of these loci on Drosophila lifespan during HSD. These loci were largely confirmed to affect lifespan in that HSD setting, as well as a normal diet setting. However, we also detected unexpected dietary effects of the HSD, including inconsistent diet effects on lifespan relative to a normal diet and a strong downregulation of feeding quantity.
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spelling pubmed-81878232021-06-16 Identification of genetic modifiers of lifespan on a high sugar diet in the Drosophila Genetic Reference Panel Patel, Sumit P. Talbert, Matthew E. Heliyon Research Article Genome-wide association studies (GWAS) have become beneficial in identifying genetic variants underlying susceptibility to various complex diseases and conditions, including obesity. Utilizing the Drosophila Genetic Reference Panel (DGRP), we performed a GWAS of lifespan of 193 genetically distinct lines on a high sugar diet (HSD). The DGRP analysis pipeline determined the most significant lifespan associated polymorphisms were within loci of genes involved in: neural processes, behavior, development, and apoptosis, among other functions. Next, based on the relevance to obesity pathology, and the availability of transgenic RNAi lines targeting the genes we identified, whole-body in vivo knockdown of several candidate genes was performed. We utilized the GAL4-UAS binary expression system to independently validate the impacts of these loci on Drosophila lifespan during HSD. These loci were largely confirmed to affect lifespan in that HSD setting, as well as a normal diet setting. However, we also detected unexpected dietary effects of the HSD, including inconsistent diet effects on lifespan relative to a normal diet and a strong downregulation of feeding quantity. Elsevier 2021-06-05 /pmc/articles/PMC8187823/ /pubmed/34141921 http://dx.doi.org/10.1016/j.heliyon.2021.e07153 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Patel, Sumit P.
Talbert, Matthew E.
Identification of genetic modifiers of lifespan on a high sugar diet in the Drosophila Genetic Reference Panel
title Identification of genetic modifiers of lifespan on a high sugar diet in the Drosophila Genetic Reference Panel
title_full Identification of genetic modifiers of lifespan on a high sugar diet in the Drosophila Genetic Reference Panel
title_fullStr Identification of genetic modifiers of lifespan on a high sugar diet in the Drosophila Genetic Reference Panel
title_full_unstemmed Identification of genetic modifiers of lifespan on a high sugar diet in the Drosophila Genetic Reference Panel
title_short Identification of genetic modifiers of lifespan on a high sugar diet in the Drosophila Genetic Reference Panel
title_sort identification of genetic modifiers of lifespan on a high sugar diet in the drosophila genetic reference panel
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8187823/
https://www.ncbi.nlm.nih.gov/pubmed/34141921
http://dx.doi.org/10.1016/j.heliyon.2021.e07153
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