Cargando…

AIDeveloper: Deep Learning Image Classification in Life Science and Beyond

Artificial intelligence (AI)‐based image analysis has increased drastically in recent years. However, all applications use individual solutions, highly specialized for a particular task. Here, an easy‐to‐use, adaptable, and open source software, called AIDeveloper (AID) to train neural nets (NN) for...

Descripción completa

Detalles Bibliográficos
Autores principales: Kräter, Martin, Abuhattum, Shada, Soteriou, Despina, Jacobi, Angela, Krüger, Thomas, Guck, Jochen, Herbig, Maik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8188199/
https://www.ncbi.nlm.nih.gov/pubmed/34105281
http://dx.doi.org/10.1002/advs.202003743
_version_ 1783705290509647872
author Kräter, Martin
Abuhattum, Shada
Soteriou, Despina
Jacobi, Angela
Krüger, Thomas
Guck, Jochen
Herbig, Maik
author_facet Kräter, Martin
Abuhattum, Shada
Soteriou, Despina
Jacobi, Angela
Krüger, Thomas
Guck, Jochen
Herbig, Maik
author_sort Kräter, Martin
collection PubMed
description Artificial intelligence (AI)‐based image analysis has increased drastically in recent years. However, all applications use individual solutions, highly specialized for a particular task. Here, an easy‐to‐use, adaptable, and open source software, called AIDeveloper (AID) to train neural nets (NN) for image classification without the need for programming is presented. AID provides a variety of NN‐architectures, allowing to apply trained models on new data, obtain performance metrics, and export final models to different formats. AID is benchmarked on large image datasets (CIFAR‐10 and Fashion‐MNIST). Furthermore, models are trained to distinguish areas of differentiated stem cells in images of cell culture. A conventional blood cell count and a blood count obtained using an NN are compared, trained on >1.2 million images, and demonstrated how AID can be used for label‐free classification of B‐ and T‐cells. All models are generated by non‐programmers on generic computers, allowing for an interdisciplinary use.
format Online
Article
Text
id pubmed-8188199
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-81881992021-06-16 AIDeveloper: Deep Learning Image Classification in Life Science and Beyond Kräter, Martin Abuhattum, Shada Soteriou, Despina Jacobi, Angela Krüger, Thomas Guck, Jochen Herbig, Maik Adv Sci (Weinh) Full Papers Artificial intelligence (AI)‐based image analysis has increased drastically in recent years. However, all applications use individual solutions, highly specialized for a particular task. Here, an easy‐to‐use, adaptable, and open source software, called AIDeveloper (AID) to train neural nets (NN) for image classification without the need for programming is presented. AID provides a variety of NN‐architectures, allowing to apply trained models on new data, obtain performance metrics, and export final models to different formats. AID is benchmarked on large image datasets (CIFAR‐10 and Fashion‐MNIST). Furthermore, models are trained to distinguish areas of differentiated stem cells in images of cell culture. A conventional blood cell count and a blood count obtained using an NN are compared, trained on >1.2 million images, and demonstrated how AID can be used for label‐free classification of B‐ and T‐cells. All models are generated by non‐programmers on generic computers, allowing for an interdisciplinary use. John Wiley and Sons Inc. 2021-03-18 /pmc/articles/PMC8188199/ /pubmed/34105281 http://dx.doi.org/10.1002/advs.202003743 Text en © 2021 The Authors. Advanced Science published by Wiley‐VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Kräter, Martin
Abuhattum, Shada
Soteriou, Despina
Jacobi, Angela
Krüger, Thomas
Guck, Jochen
Herbig, Maik
AIDeveloper: Deep Learning Image Classification in Life Science and Beyond
title AIDeveloper: Deep Learning Image Classification in Life Science and Beyond
title_full AIDeveloper: Deep Learning Image Classification in Life Science and Beyond
title_fullStr AIDeveloper: Deep Learning Image Classification in Life Science and Beyond
title_full_unstemmed AIDeveloper: Deep Learning Image Classification in Life Science and Beyond
title_short AIDeveloper: Deep Learning Image Classification in Life Science and Beyond
title_sort aideveloper: deep learning image classification in life science and beyond
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8188199/
https://www.ncbi.nlm.nih.gov/pubmed/34105281
http://dx.doi.org/10.1002/advs.202003743
work_keys_str_mv AT kratermartin aideveloperdeeplearningimageclassificationinlifescienceandbeyond
AT abuhattumshada aideveloperdeeplearningimageclassificationinlifescienceandbeyond
AT soterioudespina aideveloperdeeplearningimageclassificationinlifescienceandbeyond
AT jacobiangela aideveloperdeeplearningimageclassificationinlifescienceandbeyond
AT krugerthomas aideveloperdeeplearningimageclassificationinlifescienceandbeyond
AT guckjochen aideveloperdeeplearningimageclassificationinlifescienceandbeyond
AT herbigmaik aideveloperdeeplearningimageclassificationinlifescienceandbeyond