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Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel
Diagnostic laboratories gather phenotypic data through requisition forms, but there is no consensus as to which data are essential for variant interpretation. The ClinGen Cardiomyopathy Variant Curation Expert Panel defined a phenotypic data set for hypertrophic cardiomyopathy (HCM) variant interpre...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society for Investigative Pathology
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8188618/ https://www.ncbi.nlm.nih.gov/pubmed/33631351 http://dx.doi.org/10.1016/j.jmoldx.2021.01.014 |
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author | Morales, Ana Ing, Alexander Antolik, Christian Austin-Tse, Christina Baudhuin, Linnea M. Bronicki, Lucas Cirino, Allison Hawley, Megan H. Fietz, Michael Garcia, John Ho, Carolyn Ingles, Jodie Jarinova, Olga Johnston, Tami Kelly, Melissa A. Kurtz, C. Lisa Lebo, Matt Macaya, Daniela Mahanta, Lisa Maleszewski, Joseph Manrai, Arjun K. Murray, Mitzi Richard, Gabriele Semsarian, Chris Thomson, Kate L. Winder, Tom Ware, James S. Hershberger, Ray E. Funke, Birgit H. Vatta, Matteo |
author_facet | Morales, Ana Ing, Alexander Antolik, Christian Austin-Tse, Christina Baudhuin, Linnea M. Bronicki, Lucas Cirino, Allison Hawley, Megan H. Fietz, Michael Garcia, John Ho, Carolyn Ingles, Jodie Jarinova, Olga Johnston, Tami Kelly, Melissa A. Kurtz, C. Lisa Lebo, Matt Macaya, Daniela Mahanta, Lisa Maleszewski, Joseph Manrai, Arjun K. Murray, Mitzi Richard, Gabriele Semsarian, Chris Thomson, Kate L. Winder, Tom Ware, James S. Hershberger, Ray E. Funke, Birgit H. Vatta, Matteo |
author_sort | Morales, Ana |
collection | PubMed |
description | Diagnostic laboratories gather phenotypic data through requisition forms, but there is no consensus as to which data are essential for variant interpretation. The ClinGen Cardiomyopathy Variant Curation Expert Panel defined a phenotypic data set for hypertrophic cardiomyopathy (HCM) variant interpretation, with the goal of standardizing requisition forms. Phenotypic data elements listed on requisition forms from nine leading cardiomyopathy testing laboratories were compiled to assess divergence in data collection. A pilot of 50 HCM cases was implemented to determine the feasibility of harmonizing data collection. Laboratory directors were surveyed to gauge potential for adoption of a minimal data set. Wide divergence was observed in the phenotypic data fields in requisition forms. The 50-case pilot showed that although demographics and assertion of a clinical diagnosis of HCM had 86% to 98% completion, specific phenotypic features, such as degree of left ventricular hypertrophy, ejection fraction, and suspected syndromic disease, were completed only 24% to 44% of the time. Nine data elements were deemed essential for variant classification by the expert panel. Participating laboratories unanimously expressed a willingness to adopt these data elements in their requisition forms. This study demonstrates the value of comparing and sharing best practices through an expert group, such as the ClinGen Program, to enhance variant interpretation, providing a foundation for leveraging cumulative case-level data in public databases and ultimately improving patient care. |
format | Online Article Text |
id | pubmed-8188618 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Society for Investigative Pathology |
record_format | MEDLINE/PubMed |
spelling | pubmed-81886182021-11-01 Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel Morales, Ana Ing, Alexander Antolik, Christian Austin-Tse, Christina Baudhuin, Linnea M. Bronicki, Lucas Cirino, Allison Hawley, Megan H. Fietz, Michael Garcia, John Ho, Carolyn Ingles, Jodie Jarinova, Olga Johnston, Tami Kelly, Melissa A. Kurtz, C. Lisa Lebo, Matt Macaya, Daniela Mahanta, Lisa Maleszewski, Joseph Manrai, Arjun K. Murray, Mitzi Richard, Gabriele Semsarian, Chris Thomson, Kate L. Winder, Tom Ware, James S. Hershberger, Ray E. Funke, Birgit H. Vatta, Matteo J Mol Diagn Regular Article Diagnostic laboratories gather phenotypic data through requisition forms, but there is no consensus as to which data are essential for variant interpretation. The ClinGen Cardiomyopathy Variant Curation Expert Panel defined a phenotypic data set for hypertrophic cardiomyopathy (HCM) variant interpretation, with the goal of standardizing requisition forms. Phenotypic data elements listed on requisition forms from nine leading cardiomyopathy testing laboratories were compiled to assess divergence in data collection. A pilot of 50 HCM cases was implemented to determine the feasibility of harmonizing data collection. Laboratory directors were surveyed to gauge potential for adoption of a minimal data set. Wide divergence was observed in the phenotypic data fields in requisition forms. The 50-case pilot showed that although demographics and assertion of a clinical diagnosis of HCM had 86% to 98% completion, specific phenotypic features, such as degree of left ventricular hypertrophy, ejection fraction, and suspected syndromic disease, were completed only 24% to 44% of the time. Nine data elements were deemed essential for variant classification by the expert panel. Participating laboratories unanimously expressed a willingness to adopt these data elements in their requisition forms. This study demonstrates the value of comparing and sharing best practices through an expert group, such as the ClinGen Program, to enhance variant interpretation, providing a foundation for leveraging cumulative case-level data in public databases and ultimately improving patient care. American Society for Investigative Pathology 2021-05 /pmc/articles/PMC8188618/ /pubmed/33631351 http://dx.doi.org/10.1016/j.jmoldx.2021.01.014 Text en © 2021 Association for Molecular Pathology and American Society for Investigative Pathology. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Regular Article Morales, Ana Ing, Alexander Antolik, Christian Austin-Tse, Christina Baudhuin, Linnea M. Bronicki, Lucas Cirino, Allison Hawley, Megan H. Fietz, Michael Garcia, John Ho, Carolyn Ingles, Jodie Jarinova, Olga Johnston, Tami Kelly, Melissa A. Kurtz, C. Lisa Lebo, Matt Macaya, Daniela Mahanta, Lisa Maleszewski, Joseph Manrai, Arjun K. Murray, Mitzi Richard, Gabriele Semsarian, Chris Thomson, Kate L. Winder, Tom Ware, James S. Hershberger, Ray E. Funke, Birgit H. Vatta, Matteo Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel |
title | Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel |
title_full | Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel |
title_fullStr | Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel |
title_full_unstemmed | Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel |
title_short | Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel |
title_sort | harmonizing the collection of clinical data on genetic testing requisition forms to enhance variant interpretation in hypertrophic cardiomyopathy (hcm): a study from the clingen cardiomyopathy variant curation expert panel |
topic | Regular Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8188618/ https://www.ncbi.nlm.nih.gov/pubmed/33631351 http://dx.doi.org/10.1016/j.jmoldx.2021.01.014 |
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