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Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel

Diagnostic laboratories gather phenotypic data through requisition forms, but there is no consensus as to which data are essential for variant interpretation. The ClinGen Cardiomyopathy Variant Curation Expert Panel defined a phenotypic data set for hypertrophic cardiomyopathy (HCM) variant interpre...

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Autores principales: Morales, Ana, Ing, Alexander, Antolik, Christian, Austin-Tse, Christina, Baudhuin, Linnea M., Bronicki, Lucas, Cirino, Allison, Hawley, Megan H., Fietz, Michael, Garcia, John, Ho, Carolyn, Ingles, Jodie, Jarinova, Olga, Johnston, Tami, Kelly, Melissa A., Kurtz, C. Lisa, Lebo, Matt, Macaya, Daniela, Mahanta, Lisa, Maleszewski, Joseph, Manrai, Arjun K., Murray, Mitzi, Richard, Gabriele, Semsarian, Chris, Thomson, Kate L., Winder, Tom, Ware, James S., Hershberger, Ray E., Funke, Birgit H., Vatta, Matteo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Investigative Pathology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8188618/
https://www.ncbi.nlm.nih.gov/pubmed/33631351
http://dx.doi.org/10.1016/j.jmoldx.2021.01.014
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author Morales, Ana
Ing, Alexander
Antolik, Christian
Austin-Tse, Christina
Baudhuin, Linnea M.
Bronicki, Lucas
Cirino, Allison
Hawley, Megan H.
Fietz, Michael
Garcia, John
Ho, Carolyn
Ingles, Jodie
Jarinova, Olga
Johnston, Tami
Kelly, Melissa A.
Kurtz, C. Lisa
Lebo, Matt
Macaya, Daniela
Mahanta, Lisa
Maleszewski, Joseph
Manrai, Arjun K.
Murray, Mitzi
Richard, Gabriele
Semsarian, Chris
Thomson, Kate L.
Winder, Tom
Ware, James S.
Hershberger, Ray E.
Funke, Birgit H.
Vatta, Matteo
author_facet Morales, Ana
Ing, Alexander
Antolik, Christian
Austin-Tse, Christina
Baudhuin, Linnea M.
Bronicki, Lucas
Cirino, Allison
Hawley, Megan H.
Fietz, Michael
Garcia, John
Ho, Carolyn
Ingles, Jodie
Jarinova, Olga
Johnston, Tami
Kelly, Melissa A.
Kurtz, C. Lisa
Lebo, Matt
Macaya, Daniela
Mahanta, Lisa
Maleszewski, Joseph
Manrai, Arjun K.
Murray, Mitzi
Richard, Gabriele
Semsarian, Chris
Thomson, Kate L.
Winder, Tom
Ware, James S.
Hershberger, Ray E.
Funke, Birgit H.
Vatta, Matteo
author_sort Morales, Ana
collection PubMed
description Diagnostic laboratories gather phenotypic data through requisition forms, but there is no consensus as to which data are essential for variant interpretation. The ClinGen Cardiomyopathy Variant Curation Expert Panel defined a phenotypic data set for hypertrophic cardiomyopathy (HCM) variant interpretation, with the goal of standardizing requisition forms. Phenotypic data elements listed on requisition forms from nine leading cardiomyopathy testing laboratories were compiled to assess divergence in data collection. A pilot of 50 HCM cases was implemented to determine the feasibility of harmonizing data collection. Laboratory directors were surveyed to gauge potential for adoption of a minimal data set. Wide divergence was observed in the phenotypic data fields in requisition forms. The 50-case pilot showed that although demographics and assertion of a clinical diagnosis of HCM had 86% to 98% completion, specific phenotypic features, such as degree of left ventricular hypertrophy, ejection fraction, and suspected syndromic disease, were completed only 24% to 44% of the time. Nine data elements were deemed essential for variant classification by the expert panel. Participating laboratories unanimously expressed a willingness to adopt these data elements in their requisition forms. This study demonstrates the value of comparing and sharing best practices through an expert group, such as the ClinGen Program, to enhance variant interpretation, providing a foundation for leveraging cumulative case-level data in public databases and ultimately improving patient care.
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spelling pubmed-81886182021-11-01 Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel Morales, Ana Ing, Alexander Antolik, Christian Austin-Tse, Christina Baudhuin, Linnea M. Bronicki, Lucas Cirino, Allison Hawley, Megan H. Fietz, Michael Garcia, John Ho, Carolyn Ingles, Jodie Jarinova, Olga Johnston, Tami Kelly, Melissa A. Kurtz, C. Lisa Lebo, Matt Macaya, Daniela Mahanta, Lisa Maleszewski, Joseph Manrai, Arjun K. Murray, Mitzi Richard, Gabriele Semsarian, Chris Thomson, Kate L. Winder, Tom Ware, James S. Hershberger, Ray E. Funke, Birgit H. Vatta, Matteo J Mol Diagn Regular Article Diagnostic laboratories gather phenotypic data through requisition forms, but there is no consensus as to which data are essential for variant interpretation. The ClinGen Cardiomyopathy Variant Curation Expert Panel defined a phenotypic data set for hypertrophic cardiomyopathy (HCM) variant interpretation, with the goal of standardizing requisition forms. Phenotypic data elements listed on requisition forms from nine leading cardiomyopathy testing laboratories were compiled to assess divergence in data collection. A pilot of 50 HCM cases was implemented to determine the feasibility of harmonizing data collection. Laboratory directors were surveyed to gauge potential for adoption of a minimal data set. Wide divergence was observed in the phenotypic data fields in requisition forms. The 50-case pilot showed that although demographics and assertion of a clinical diagnosis of HCM had 86% to 98% completion, specific phenotypic features, such as degree of left ventricular hypertrophy, ejection fraction, and suspected syndromic disease, were completed only 24% to 44% of the time. Nine data elements were deemed essential for variant classification by the expert panel. Participating laboratories unanimously expressed a willingness to adopt these data elements in their requisition forms. This study demonstrates the value of comparing and sharing best practices through an expert group, such as the ClinGen Program, to enhance variant interpretation, providing a foundation for leveraging cumulative case-level data in public databases and ultimately improving patient care. American Society for Investigative Pathology 2021-05 /pmc/articles/PMC8188618/ /pubmed/33631351 http://dx.doi.org/10.1016/j.jmoldx.2021.01.014 Text en © 2021 Association for Molecular Pathology and American Society for Investigative Pathology. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Regular Article
Morales, Ana
Ing, Alexander
Antolik, Christian
Austin-Tse, Christina
Baudhuin, Linnea M.
Bronicki, Lucas
Cirino, Allison
Hawley, Megan H.
Fietz, Michael
Garcia, John
Ho, Carolyn
Ingles, Jodie
Jarinova, Olga
Johnston, Tami
Kelly, Melissa A.
Kurtz, C. Lisa
Lebo, Matt
Macaya, Daniela
Mahanta, Lisa
Maleszewski, Joseph
Manrai, Arjun K.
Murray, Mitzi
Richard, Gabriele
Semsarian, Chris
Thomson, Kate L.
Winder, Tom
Ware, James S.
Hershberger, Ray E.
Funke, Birgit H.
Vatta, Matteo
Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel
title Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel
title_full Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel
title_fullStr Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel
title_full_unstemmed Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel
title_short Harmonizing the Collection of Clinical Data on Genetic Testing Requisition Forms to Enhance Variant Interpretation in Hypertrophic Cardiomyopathy (HCM): A Study from the ClinGen Cardiomyopathy Variant Curation Expert Panel
title_sort harmonizing the collection of clinical data on genetic testing requisition forms to enhance variant interpretation in hypertrophic cardiomyopathy (hcm): a study from the clingen cardiomyopathy variant curation expert panel
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8188618/
https://www.ncbi.nlm.nih.gov/pubmed/33631351
http://dx.doi.org/10.1016/j.jmoldx.2021.01.014
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