Cargando…

SCOAT-Net: A novel network for segmenting COVID-19 lung opacification from CT images

Automatic segmentation of lung opacification from computed tomography (CT) images shows excellent potential for quickly and accurately quantifying the infection of Coronavirus disease 2019 (COVID-19) and judging the disease development and treatment response. However, some challenges still exist, in...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhao, Shixuan, Li, Zhidan, Chen, Yang, Zhao, Wei, Xie, Xingzhi, Liu, Jun, Zhao, Di, Li, Yongjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8189738/
https://www.ncbi.nlm.nih.gov/pubmed/34127870
http://dx.doi.org/10.1016/j.patcog.2021.108109
_version_ 1783705546220634112
author Zhao, Shixuan
Li, Zhidan
Chen, Yang
Zhao, Wei
Xie, Xingzhi
Liu, Jun
Zhao, Di
Li, Yongjie
author_facet Zhao, Shixuan
Li, Zhidan
Chen, Yang
Zhao, Wei
Xie, Xingzhi
Liu, Jun
Zhao, Di
Li, Yongjie
author_sort Zhao, Shixuan
collection PubMed
description Automatic segmentation of lung opacification from computed tomography (CT) images shows excellent potential for quickly and accurately quantifying the infection of Coronavirus disease 2019 (COVID-19) and judging the disease development and treatment response. However, some challenges still exist, including the complexity and variability features of the opacity regions, the small difference between the infected and healthy tissues, and the noise of CT images. Due to limited medical resources, it is impractical to obtain a large amount of data in a short time, which further hinders the training of deep learning models. To answer these challenges, we proposed a novel spatial- and channel-wise coarse-to-fine attention network (SCOAT-Net), inspired by the biological vision mechanism, for the segmentation of COVID-19 lung opacification from CT images. With the UNet++ as basic structure, our SCOAT-Net introduces the specially designed spatial-wise and channel-wise attention modules, which serve to collaboratively boost the attention learning of the network and extract the efficient features of the infected opacification regions at the pixel and channel levels. Experiments show that our proposed SCOAT-Net achieves better results compared to several state-of-the-art image segmentation networks and has acceptable generalization ability.
format Online
Article
Text
id pubmed-8189738
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier Ltd.
record_format MEDLINE/PubMed
spelling pubmed-81897382021-06-10 SCOAT-Net: A novel network for segmenting COVID-19 lung opacification from CT images Zhao, Shixuan Li, Zhidan Chen, Yang Zhao, Wei Xie, Xingzhi Liu, Jun Zhao, Di Li, Yongjie Pattern Recognit Article Automatic segmentation of lung opacification from computed tomography (CT) images shows excellent potential for quickly and accurately quantifying the infection of Coronavirus disease 2019 (COVID-19) and judging the disease development and treatment response. However, some challenges still exist, including the complexity and variability features of the opacity regions, the small difference between the infected and healthy tissues, and the noise of CT images. Due to limited medical resources, it is impractical to obtain a large amount of data in a short time, which further hinders the training of deep learning models. To answer these challenges, we proposed a novel spatial- and channel-wise coarse-to-fine attention network (SCOAT-Net), inspired by the biological vision mechanism, for the segmentation of COVID-19 lung opacification from CT images. With the UNet++ as basic structure, our SCOAT-Net introduces the specially designed spatial-wise and channel-wise attention modules, which serve to collaboratively boost the attention learning of the network and extract the efficient features of the infected opacification regions at the pixel and channel levels. Experiments show that our proposed SCOAT-Net achieves better results compared to several state-of-the-art image segmentation networks and has acceptable generalization ability. Elsevier Ltd. 2021-11 2021-06-10 /pmc/articles/PMC8189738/ /pubmed/34127870 http://dx.doi.org/10.1016/j.patcog.2021.108109 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Zhao, Shixuan
Li, Zhidan
Chen, Yang
Zhao, Wei
Xie, Xingzhi
Liu, Jun
Zhao, Di
Li, Yongjie
SCOAT-Net: A novel network for segmenting COVID-19 lung opacification from CT images
title SCOAT-Net: A novel network for segmenting COVID-19 lung opacification from CT images
title_full SCOAT-Net: A novel network for segmenting COVID-19 lung opacification from CT images
title_fullStr SCOAT-Net: A novel network for segmenting COVID-19 lung opacification from CT images
title_full_unstemmed SCOAT-Net: A novel network for segmenting COVID-19 lung opacification from CT images
title_short SCOAT-Net: A novel network for segmenting COVID-19 lung opacification from CT images
title_sort scoat-net: a novel network for segmenting covid-19 lung opacification from ct images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8189738/
https://www.ncbi.nlm.nih.gov/pubmed/34127870
http://dx.doi.org/10.1016/j.patcog.2021.108109
work_keys_str_mv AT zhaoshixuan scoatnetanovelnetworkforsegmentingcovid19lungopacificationfromctimages
AT lizhidan scoatnetanovelnetworkforsegmentingcovid19lungopacificationfromctimages
AT chenyang scoatnetanovelnetworkforsegmentingcovid19lungopacificationfromctimages
AT zhaowei scoatnetanovelnetworkforsegmentingcovid19lungopacificationfromctimages
AT xiexingzhi scoatnetanovelnetworkforsegmentingcovid19lungopacificationfromctimages
AT liujun scoatnetanovelnetworkforsegmentingcovid19lungopacificationfromctimages
AT zhaodi scoatnetanovelnetworkforsegmentingcovid19lungopacificationfromctimages
AT liyongjie scoatnetanovelnetworkforsegmentingcovid19lungopacificationfromctimages