Cargando…
The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus
Members of the genus Treron (Columbidae) are widely distributed in southern Asia and the Indo-Malayan Region but their relationships are poorly understood. Better knowledge of the systematic status of this genus may help studies of historical biogeography and taxonomy. The complete mitochondrial gen...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8190031/ https://www.ncbi.nlm.nih.gov/pubmed/34149293 http://dx.doi.org/10.3897/zookeys.1041.60150 |
_version_ | 1783705607077888000 |
---|---|
author | Xu, Nan Ding, Jiayu Que, Ziting Xu, Wei Ye, Wentao Liu, Hongyi |
author_facet | Xu, Nan Ding, Jiayu Que, Ziting Xu, Wei Ye, Wentao Liu, Hongyi |
author_sort | Xu, Nan |
collection | PubMed |
description | Members of the genus Treron (Columbidae) are widely distributed in southern Asia and the Indo-Malayan Region but their relationships are poorly understood. Better knowledge of the systematic status of this genus may help studies of historical biogeography and taxonomy. The complete mitochondrial genome of T. curvirostra was characterized, a first for the genus. It is 17,414 base pairs in length, containing two rRNAs, 22 tRNAs, 13 protein coding genes (PCGs), and one D-loop with a primary structure that is similar to that found in most members of Columbidae. Most PCGs start with the common ATG codon but are terminated by different codons. The highest value of the Ka/Ks ratio within 13 PCGs was found in ATP8 with 0.1937, suggesting that PCGs of the mitochondrial genome tend to be conservative in Columbidae. Moreover, the phylogenetic relationships within Columbidae, which was based on sequences of 13 PCGs, showed that (T. curvirostra + Hemiphaga novaeseelandiae) were clustered in one clade, suggesting a potentially close relationship between Treron and Hemiphaga. However, the monophyly of the subfamilies of Columbidae recognized by the Interagency Taxonomic Information System could not be corroborated. Hence, the position of the genus Treron in the classification of Columbidae may have to be revised. |
format | Online Article Text |
id | pubmed-8190031 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-81900312021-06-17 The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus Xu, Nan Ding, Jiayu Que, Ziting Xu, Wei Ye, Wentao Liu, Hongyi Zookeys Research Article Members of the genus Treron (Columbidae) are widely distributed in southern Asia and the Indo-Malayan Region but their relationships are poorly understood. Better knowledge of the systematic status of this genus may help studies of historical biogeography and taxonomy. The complete mitochondrial genome of T. curvirostra was characterized, a first for the genus. It is 17,414 base pairs in length, containing two rRNAs, 22 tRNAs, 13 protein coding genes (PCGs), and one D-loop with a primary structure that is similar to that found in most members of Columbidae. Most PCGs start with the common ATG codon but are terminated by different codons. The highest value of the Ka/Ks ratio within 13 PCGs was found in ATP8 with 0.1937, suggesting that PCGs of the mitochondrial genome tend to be conservative in Columbidae. Moreover, the phylogenetic relationships within Columbidae, which was based on sequences of 13 PCGs, showed that (T. curvirostra + Hemiphaga novaeseelandiae) were clustered in one clade, suggesting a potentially close relationship between Treron and Hemiphaga. However, the monophyly of the subfamilies of Columbidae recognized by the Interagency Taxonomic Information System could not be corroborated. Hence, the position of the genus Treron in the classification of Columbidae may have to be revised. Pensoft Publishers 2021-06-02 /pmc/articles/PMC8190031/ /pubmed/34149293 http://dx.doi.org/10.3897/zookeys.1041.60150 Text en Nan Xu, Jiayu Ding, Ziting Que, Wei Xu, Wentao Ye, Hongyi Liu https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Xu, Nan Ding, Jiayu Que, Ziting Xu, Wei Ye, Wentao Liu, Hongyi The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus |
title | The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron
curvirostra: the first sequence for the genus |
title_full | The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron
curvirostra: the first sequence for the genus |
title_fullStr | The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron
curvirostra: the first sequence for the genus |
title_full_unstemmed | The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron
curvirostra: the first sequence for the genus |
title_short | The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron
curvirostra: the first sequence for the genus |
title_sort | mitochondrial genome and phylogenetic characteristics of the thick-billed green-pigeon, treron
curvirostra: the first sequence for the genus |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8190031/ https://www.ncbi.nlm.nih.gov/pubmed/34149293 http://dx.doi.org/10.3897/zookeys.1041.60150 |
work_keys_str_mv | AT xunan themitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT dingjiayu themitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT queziting themitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT xuwei themitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT yewentao themitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT liuhongyi themitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT xunan mitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT dingjiayu mitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT queziting mitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT xuwei mitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT yewentao mitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus AT liuhongyi mitochondrialgenomeandphylogeneticcharacteristicsofthethickbilledgreenpigeontreroncurvirostrathefirstsequenceforthegenus |