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The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus

Members of the genus Treron (Columbidae) are widely distributed in southern Asia and the Indo-Malayan Region but their relationships are poorly understood. Better knowledge of the systematic status of this genus may help studies of historical biogeography and taxonomy. The complete mitochondrial gen...

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Autores principales: Xu, Nan, Ding, Jiayu, Que, Ziting, Xu, Wei, Ye, Wentao, Liu, Hongyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8190031/
https://www.ncbi.nlm.nih.gov/pubmed/34149293
http://dx.doi.org/10.3897/zookeys.1041.60150
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author Xu, Nan
Ding, Jiayu
Que, Ziting
Xu, Wei
Ye, Wentao
Liu, Hongyi
author_facet Xu, Nan
Ding, Jiayu
Que, Ziting
Xu, Wei
Ye, Wentao
Liu, Hongyi
author_sort Xu, Nan
collection PubMed
description Members of the genus Treron (Columbidae) are widely distributed in southern Asia and the Indo-Malayan Region but their relationships are poorly understood. Better knowledge of the systematic status of this genus may help studies of historical biogeography and taxonomy. The complete mitochondrial genome of T. curvirostra was characterized, a first for the genus. It is 17,414 base pairs in length, containing two rRNAs, 22 tRNAs, 13 protein coding genes (PCGs), and one D-loop with a primary structure that is similar to that found in most members of Columbidae. Most PCGs start with the common ATG codon but are terminated by different codons. The highest value of the Ka/Ks ratio within 13 PCGs was found in ATP8 with 0.1937, suggesting that PCGs of the mitochondrial genome tend to be conservative in Columbidae. Moreover, the phylogenetic relationships within Columbidae, which was based on sequences of 13 PCGs, showed that (T. curvirostra + Hemiphaga novaeseelandiae) were clustered in one clade, suggesting a potentially close relationship between Treron and Hemiphaga. However, the monophyly of the subfamilies of Columbidae recognized by the Interagency Taxonomic Information System could not be corroborated. Hence, the position of the genus Treron in the classification of Columbidae may have to be revised.
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spelling pubmed-81900312021-06-17 The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus Xu, Nan Ding, Jiayu Que, Ziting Xu, Wei Ye, Wentao Liu, Hongyi Zookeys Research Article Members of the genus Treron (Columbidae) are widely distributed in southern Asia and the Indo-Malayan Region but their relationships are poorly understood. Better knowledge of the systematic status of this genus may help studies of historical biogeography and taxonomy. The complete mitochondrial genome of T. curvirostra was characterized, a first for the genus. It is 17,414 base pairs in length, containing two rRNAs, 22 tRNAs, 13 protein coding genes (PCGs), and one D-loop with a primary structure that is similar to that found in most members of Columbidae. Most PCGs start with the common ATG codon but are terminated by different codons. The highest value of the Ka/Ks ratio within 13 PCGs was found in ATP8 with 0.1937, suggesting that PCGs of the mitochondrial genome tend to be conservative in Columbidae. Moreover, the phylogenetic relationships within Columbidae, which was based on sequences of 13 PCGs, showed that (T. curvirostra + Hemiphaga novaeseelandiae) were clustered in one clade, suggesting a potentially close relationship between Treron and Hemiphaga. However, the monophyly of the subfamilies of Columbidae recognized by the Interagency Taxonomic Information System could not be corroborated. Hence, the position of the genus Treron in the classification of Columbidae may have to be revised. Pensoft Publishers 2021-06-02 /pmc/articles/PMC8190031/ /pubmed/34149293 http://dx.doi.org/10.3897/zookeys.1041.60150 Text en Nan Xu, Jiayu Ding, Ziting Que, Wei Xu, Wentao Ye, Hongyi Liu https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Xu, Nan
Ding, Jiayu
Que, Ziting
Xu, Wei
Ye, Wentao
Liu, Hongyi
The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus
title The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus
title_full The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus
title_fullStr The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus
title_full_unstemmed The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus
title_short The mitochondrial genome and phylogenetic characteristics of the Thick-billed Green-Pigeon, Treron curvirostra: the first sequence for the genus
title_sort mitochondrial genome and phylogenetic characteristics of the thick-billed green-pigeon, treron curvirostra: the first sequence for the genus
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8190031/
https://www.ncbi.nlm.nih.gov/pubmed/34149293
http://dx.doi.org/10.3897/zookeys.1041.60150
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