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Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database

Despite a growing interest in multi-omic research, individual investigators may struggle to collect large-scale omic data, particularly from human subjects. Publicly available datasets can help to address this problem, including those sponsored by the NIH Common Fund, such as the Genotype-Tissue Exp...

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Detalles Bibliográficos
Autores principales: Stanfill, Ansley Grimes, Cao, Xueyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8191158/
https://www.ncbi.nlm.nih.gov/pubmed/33596660
http://dx.doi.org/10.1177/1099800421994186
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author Stanfill, Ansley Grimes
Cao, Xueyuan
author_facet Stanfill, Ansley Grimes
Cao, Xueyuan
author_sort Stanfill, Ansley Grimes
collection PubMed
description Despite a growing interest in multi-omic research, individual investigators may struggle to collect large-scale omic data, particularly from human subjects. Publicly available datasets can help to address this problem, including those sponsored by the NIH Common Fund, such as the Genotype-Tissue Expression (GTEx) database. This database contains genotype and expression data obtained from 54 non-diseased tissues in human subjects. But these data are often underutilized, because users may find the browsing tools to be counterintuitive or have difficulty navigating the procedures to request controlled data access. Furthermore, there is limited knowledge of these resources among nurse scientists interested in incorporating such information into their programs of research. This article outlines the procedures for using the GTEx database. Next, we provide one exemplar of using this resource to enhance existing research by investigating expression of dopamine receptor type 2 (DRD2) across brain tissues in human subjects.
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spelling pubmed-81911582021-06-28 Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database Stanfill, Ansley Grimes Cao, Xueyuan Biol Res Nurs Articles Despite a growing interest in multi-omic research, individual investigators may struggle to collect large-scale omic data, particularly from human subjects. Publicly available datasets can help to address this problem, including those sponsored by the NIH Common Fund, such as the Genotype-Tissue Expression (GTEx) database. This database contains genotype and expression data obtained from 54 non-diseased tissues in human subjects. But these data are often underutilized, because users may find the browsing tools to be counterintuitive or have difficulty navigating the procedures to request controlled data access. Furthermore, there is limited knowledge of these resources among nurse scientists interested in incorporating such information into their programs of research. This article outlines the procedures for using the GTEx database. Next, we provide one exemplar of using this resource to enhance existing research by investigating expression of dopamine receptor type 2 (DRD2) across brain tissues in human subjects. SAGE Publications 2021-02-18 2021-07 /pmc/articles/PMC8191158/ /pubmed/33596660 http://dx.doi.org/10.1177/1099800421994186 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Articles
Stanfill, Ansley Grimes
Cao, Xueyuan
Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database
title Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database
title_full Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database
title_fullStr Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database
title_full_unstemmed Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database
title_short Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database
title_sort enhancing research through the use of the genotype-tissue expression (gtex) database
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8191158/
https://www.ncbi.nlm.nih.gov/pubmed/33596660
http://dx.doi.org/10.1177/1099800421994186
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