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Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database
Despite a growing interest in multi-omic research, individual investigators may struggle to collect large-scale omic data, particularly from human subjects. Publicly available datasets can help to address this problem, including those sponsored by the NIH Common Fund, such as the Genotype-Tissue Exp...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8191158/ https://www.ncbi.nlm.nih.gov/pubmed/33596660 http://dx.doi.org/10.1177/1099800421994186 |
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author | Stanfill, Ansley Grimes Cao, Xueyuan |
author_facet | Stanfill, Ansley Grimes Cao, Xueyuan |
author_sort | Stanfill, Ansley Grimes |
collection | PubMed |
description | Despite a growing interest in multi-omic research, individual investigators may struggle to collect large-scale omic data, particularly from human subjects. Publicly available datasets can help to address this problem, including those sponsored by the NIH Common Fund, such as the Genotype-Tissue Expression (GTEx) database. This database contains genotype and expression data obtained from 54 non-diseased tissues in human subjects. But these data are often underutilized, because users may find the browsing tools to be counterintuitive or have difficulty navigating the procedures to request controlled data access. Furthermore, there is limited knowledge of these resources among nurse scientists interested in incorporating such information into their programs of research. This article outlines the procedures for using the GTEx database. Next, we provide one exemplar of using this resource to enhance existing research by investigating expression of dopamine receptor type 2 (DRD2) across brain tissues in human subjects. |
format | Online Article Text |
id | pubmed-8191158 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-81911582021-06-28 Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database Stanfill, Ansley Grimes Cao, Xueyuan Biol Res Nurs Articles Despite a growing interest in multi-omic research, individual investigators may struggle to collect large-scale omic data, particularly from human subjects. Publicly available datasets can help to address this problem, including those sponsored by the NIH Common Fund, such as the Genotype-Tissue Expression (GTEx) database. This database contains genotype and expression data obtained from 54 non-diseased tissues in human subjects. But these data are often underutilized, because users may find the browsing tools to be counterintuitive or have difficulty navigating the procedures to request controlled data access. Furthermore, there is limited knowledge of these resources among nurse scientists interested in incorporating such information into their programs of research. This article outlines the procedures for using the GTEx database. Next, we provide one exemplar of using this resource to enhance existing research by investigating expression of dopamine receptor type 2 (DRD2) across brain tissues in human subjects. SAGE Publications 2021-02-18 2021-07 /pmc/articles/PMC8191158/ /pubmed/33596660 http://dx.doi.org/10.1177/1099800421994186 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Articles Stanfill, Ansley Grimes Cao, Xueyuan Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database |
title | Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database |
title_full | Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database |
title_fullStr | Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database |
title_full_unstemmed | Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database |
title_short | Enhancing Research Through the Use of the Genotype-Tissue Expression (GTEx) Database |
title_sort | enhancing research through the use of the genotype-tissue expression (gtex) database |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8191158/ https://www.ncbi.nlm.nih.gov/pubmed/33596660 http://dx.doi.org/10.1177/1099800421994186 |
work_keys_str_mv | AT stanfillansleygrimes enhancingresearchthroughtheuseofthegenotypetissueexpressiongtexdatabase AT caoxueyuan enhancingresearchthroughtheuseofthegenotypetissueexpressiongtexdatabase |