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Uncertainties in synthetic DNA-based data storage

Deoxyribonucleic acid (DNA) has evolved to be a naturally selected, robust biomacromolecule for gene information storage, and biological evolution and various diseases can find their origin in uncertainties in DNA-related processes (e.g. replication and expression). Recently, synthetic DNA has emerg...

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Autores principales: Xu, Chengtao, Zhao, Chao, Ma, Biao, Liu, Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8191772/
https://www.ncbi.nlm.nih.gov/pubmed/33836076
http://dx.doi.org/10.1093/nar/gkab230
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author Xu, Chengtao
Zhao, Chao
Ma, Biao
Liu, Hong
author_facet Xu, Chengtao
Zhao, Chao
Ma, Biao
Liu, Hong
author_sort Xu, Chengtao
collection PubMed
description Deoxyribonucleic acid (DNA) has evolved to be a naturally selected, robust biomacromolecule for gene information storage, and biological evolution and various diseases can find their origin in uncertainties in DNA-related processes (e.g. replication and expression). Recently, synthetic DNA has emerged as a compelling molecular media for digital data storage, and it is superior to the conventional electronic memory devices in theoretical retention time, power consumption, storage density, and so forth. However, uncertainties in the in vitro DNA synthesis and sequencing, along with its conjugation chemistry and preservation conditions can lead to severe errors and data loss, which limit its practical application. To maintain data integrity, complicated error correction algorithms and substantial data redundancy are usually required, which can significantly limit the efficiency and scale-up of the technology. Herein, we summarize the general procedures of the state-of-the-art DNA-based digital data storage methods (e.g. write, read, and preservation), highlighting the uncertainties involved in each step as well as potential approaches to correct them. We also discuss challenges yet to overcome and research trends in the promising field of DNA-based data storage.
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spelling pubmed-81917722021-06-11 Uncertainties in synthetic DNA-based data storage Xu, Chengtao Zhao, Chao Ma, Biao Liu, Hong Nucleic Acids Res Survey and Summary Deoxyribonucleic acid (DNA) has evolved to be a naturally selected, robust biomacromolecule for gene information storage, and biological evolution and various diseases can find their origin in uncertainties in DNA-related processes (e.g. replication and expression). Recently, synthetic DNA has emerged as a compelling molecular media for digital data storage, and it is superior to the conventional electronic memory devices in theoretical retention time, power consumption, storage density, and so forth. However, uncertainties in the in vitro DNA synthesis and sequencing, along with its conjugation chemistry and preservation conditions can lead to severe errors and data loss, which limit its practical application. To maintain data integrity, complicated error correction algorithms and substantial data redundancy are usually required, which can significantly limit the efficiency and scale-up of the technology. Herein, we summarize the general procedures of the state-of-the-art DNA-based digital data storage methods (e.g. write, read, and preservation), highlighting the uncertainties involved in each step as well as potential approaches to correct them. We also discuss challenges yet to overcome and research trends in the promising field of DNA-based data storage. Oxford University Press 2021-04-09 /pmc/articles/PMC8191772/ /pubmed/33836076 http://dx.doi.org/10.1093/nar/gkab230 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Survey and Summary
Xu, Chengtao
Zhao, Chao
Ma, Biao
Liu, Hong
Uncertainties in synthetic DNA-based data storage
title Uncertainties in synthetic DNA-based data storage
title_full Uncertainties in synthetic DNA-based data storage
title_fullStr Uncertainties in synthetic DNA-based data storage
title_full_unstemmed Uncertainties in synthetic DNA-based data storage
title_short Uncertainties in synthetic DNA-based data storage
title_sort uncertainties in synthetic dna-based data storage
topic Survey and Summary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8191772/
https://www.ncbi.nlm.nih.gov/pubmed/33836076
http://dx.doi.org/10.1093/nar/gkab230
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