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Promiscuous molecules for smarter file operations in DNA-based data storage

DNA holds significant promise as a data storage medium due to its density, longevity, and resource and energy conservation. These advantages arise from the inherent biomolecular structure of DNA which differentiates it from conventional storage media. The unique molecular architecture of DNA storage...

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Autores principales: Tomek, Kyle J., Volkel, Kevin, Indermaur, Elaine W., Tuck, James M., Keung, Albert J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8192770/
https://www.ncbi.nlm.nih.gov/pubmed/34112775
http://dx.doi.org/10.1038/s41467-021-23669-w
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author Tomek, Kyle J.
Volkel, Kevin
Indermaur, Elaine W.
Tuck, James M.
Keung, Albert J.
author_facet Tomek, Kyle J.
Volkel, Kevin
Indermaur, Elaine W.
Tuck, James M.
Keung, Albert J.
author_sort Tomek, Kyle J.
collection PubMed
description DNA holds significant promise as a data storage medium due to its density, longevity, and resource and energy conservation. These advantages arise from the inherent biomolecular structure of DNA which differentiates it from conventional storage media. The unique molecular architecture of DNA storage also prompts important discussions on how data should be organized, accessed, and manipulated and what practical functionalities may be possible. Here we leverage thermodynamic tuning of biomolecular interactions to implement useful data access and organizational features. Specific sets of environmental conditions including distinct DNA concentrations and temperatures were screened for their ability to switchably access either all DNA strands encoding full image files from a GB-sized background database or subsets of those strands encoding low resolution, File Preview, versions. We demonstrate File Preview with four JPEG images and provide an argument for the substantial and practical economic benefit of this generalizable strategy to organize data.
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spelling pubmed-81927702021-06-17 Promiscuous molecules for smarter file operations in DNA-based data storage Tomek, Kyle J. Volkel, Kevin Indermaur, Elaine W. Tuck, James M. Keung, Albert J. Nat Commun Article DNA holds significant promise as a data storage medium due to its density, longevity, and resource and energy conservation. These advantages arise from the inherent biomolecular structure of DNA which differentiates it from conventional storage media. The unique molecular architecture of DNA storage also prompts important discussions on how data should be organized, accessed, and manipulated and what practical functionalities may be possible. Here we leverage thermodynamic tuning of biomolecular interactions to implement useful data access and organizational features. Specific sets of environmental conditions including distinct DNA concentrations and temperatures were screened for their ability to switchably access either all DNA strands encoding full image files from a GB-sized background database or subsets of those strands encoding low resolution, File Preview, versions. We demonstrate File Preview with four JPEG images and provide an argument for the substantial and practical economic benefit of this generalizable strategy to organize data. Nature Publishing Group UK 2021-06-10 /pmc/articles/PMC8192770/ /pubmed/34112775 http://dx.doi.org/10.1038/s41467-021-23669-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Tomek, Kyle J.
Volkel, Kevin
Indermaur, Elaine W.
Tuck, James M.
Keung, Albert J.
Promiscuous molecules for smarter file operations in DNA-based data storage
title Promiscuous molecules for smarter file operations in DNA-based data storage
title_full Promiscuous molecules for smarter file operations in DNA-based data storage
title_fullStr Promiscuous molecules for smarter file operations in DNA-based data storage
title_full_unstemmed Promiscuous molecules for smarter file operations in DNA-based data storage
title_short Promiscuous molecules for smarter file operations in DNA-based data storage
title_sort promiscuous molecules for smarter file operations in dna-based data storage
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8192770/
https://www.ncbi.nlm.nih.gov/pubmed/34112775
http://dx.doi.org/10.1038/s41467-021-23669-w
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