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Identifying Periampullary Regions in MRI Images Using Deep Learning
BACKGROUND: Development and validation of a deep learning method to automatically segment the peri-ampullary (PA) region in magnetic resonance imaging (MRI) images. METHODS: A group of patients with or without periampullary carcinoma (PAC) was included. The PA regions were manually annotated in MRI...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8193851/ https://www.ncbi.nlm.nih.gov/pubmed/34123843 http://dx.doi.org/10.3389/fonc.2021.674579 |
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author | Tang, Yong Zheng, Yingjun Chen, Xinpei Wang, Weijia Guo, Qingxi Shu, Jian Wu, Jiali Su, Song |
author_facet | Tang, Yong Zheng, Yingjun Chen, Xinpei Wang, Weijia Guo, Qingxi Shu, Jian Wu, Jiali Su, Song |
author_sort | Tang, Yong |
collection | PubMed |
description | BACKGROUND: Development and validation of a deep learning method to automatically segment the peri-ampullary (PA) region in magnetic resonance imaging (MRI) images. METHODS: A group of patients with or without periampullary carcinoma (PAC) was included. The PA regions were manually annotated in MRI images by experts. Patients were randomly divided into one training set, one validation set, and one test set. Deep learning methods were developed to automatically segment the PA region in MRI images. The segmentation performance of the methods was compared in the validation set. The model with the highest intersection over union (IoU) was evaluated in the test set. RESULTS: The deep learning algorithm achieved optimal accuracies in the segmentation of the PA regions in both T1 and T2 MRI images. The value of the IoU was 0.68, 0.68, and 0.64 for T1, T2, and combination of T1 and T2 images, respectively. CONCLUSIONS: Deep learning algorithm is promising with accuracies of concordance with manual human assessment in segmentation of the PA region in MRI images. This automated non-invasive method helps clinicians to identify and locate the PA region using preoperative MRI scanning. |
format | Online Article Text |
id | pubmed-8193851 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-81938512021-06-12 Identifying Periampullary Regions in MRI Images Using Deep Learning Tang, Yong Zheng, Yingjun Chen, Xinpei Wang, Weijia Guo, Qingxi Shu, Jian Wu, Jiali Su, Song Front Oncol Oncology BACKGROUND: Development and validation of a deep learning method to automatically segment the peri-ampullary (PA) region in magnetic resonance imaging (MRI) images. METHODS: A group of patients with or without periampullary carcinoma (PAC) was included. The PA regions were manually annotated in MRI images by experts. Patients were randomly divided into one training set, one validation set, and one test set. Deep learning methods were developed to automatically segment the PA region in MRI images. The segmentation performance of the methods was compared in the validation set. The model with the highest intersection over union (IoU) was evaluated in the test set. RESULTS: The deep learning algorithm achieved optimal accuracies in the segmentation of the PA regions in both T1 and T2 MRI images. The value of the IoU was 0.68, 0.68, and 0.64 for T1, T2, and combination of T1 and T2 images, respectively. CONCLUSIONS: Deep learning algorithm is promising with accuracies of concordance with manual human assessment in segmentation of the PA region in MRI images. This automated non-invasive method helps clinicians to identify and locate the PA region using preoperative MRI scanning. Frontiers Media S.A. 2021-05-28 /pmc/articles/PMC8193851/ /pubmed/34123843 http://dx.doi.org/10.3389/fonc.2021.674579 Text en Copyright © 2021 Tang, Zheng, Chen, Wang, Guo, Shu, Wu and Su https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Tang, Yong Zheng, Yingjun Chen, Xinpei Wang, Weijia Guo, Qingxi Shu, Jian Wu, Jiali Su, Song Identifying Periampullary Regions in MRI Images Using Deep Learning |
title | Identifying Periampullary Regions in MRI Images Using Deep Learning |
title_full | Identifying Periampullary Regions in MRI Images Using Deep Learning |
title_fullStr | Identifying Periampullary Regions in MRI Images Using Deep Learning |
title_full_unstemmed | Identifying Periampullary Regions in MRI Images Using Deep Learning |
title_short | Identifying Periampullary Regions in MRI Images Using Deep Learning |
title_sort | identifying periampullary regions in mri images using deep learning |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8193851/ https://www.ncbi.nlm.nih.gov/pubmed/34123843 http://dx.doi.org/10.3389/fonc.2021.674579 |
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