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Free Energies of Hydrated Halide Anions: High Through-Put Computations on Clusters to Treat Rough Energy-Landscapes
With a longer-term goal of addressing the comparative behavior of the aqueous halides F [Formula: see text] , Cl [Formula: see text] , Br [Formula: see text] , and I [Formula: see text] on the basis of quasi-chemical theory (QCT), here we study structures and free energies of hydration clusters for...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8196753/ https://www.ncbi.nlm.nih.gov/pubmed/34064203 http://dx.doi.org/10.3390/molecules26113087 |
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author | Gomez, Diego T. Pratt, Lawrence R. Rogers, David M. Rempe, Susan B. |
author_facet | Gomez, Diego T. Pratt, Lawrence R. Rogers, David M. Rempe, Susan B. |
author_sort | Gomez, Diego T. |
collection | PubMed |
description | With a longer-term goal of addressing the comparative behavior of the aqueous halides F [Formula: see text] , Cl [Formula: see text] , Br [Formula: see text] , and I [Formula: see text] on the basis of quasi-chemical theory (QCT), here we study structures and free energies of hydration clusters for those anions. We confirm that energetically optimal [Formula: see text] clusters, with X = Cl [Formula: see text] , Br [Formula: see text] , and I [Formula: see text] , exhibit surface hydration structures. Computed free energies, based on optimized surface hydration structures utilizing a harmonic approximation, typically (but not always) disagree with experimental free energies. To remedy the harmonic approximation, we utilize single-point electronic structure calculations on cluster geometries sampled from an AIMD (ab initio molecular dynamics) simulation stream. This rough-landscape procedure is broadly satisfactory and suggests unfavorable ligand crowding as the physical effect addressed. Nevertheless, this procedure can break down when [Formula: see text] , with the characteristic discrepancy resulting from a relaxed definition of clustering in the identification of [Formula: see text] clusters, including ramified structures natural in physical cluster theories. With ramified structures, the central equation for the present rough-landscape approach can acquire some inconsistency. Extension of these physical cluster theories in the direction of QCT should remedy that issue, and should be the next step in this research direction. |
format | Online Article Text |
id | pubmed-8196753 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81967532021-06-13 Free Energies of Hydrated Halide Anions: High Through-Put Computations on Clusters to Treat Rough Energy-Landscapes Gomez, Diego T. Pratt, Lawrence R. Rogers, David M. Rempe, Susan B. Molecules Article With a longer-term goal of addressing the comparative behavior of the aqueous halides F [Formula: see text] , Cl [Formula: see text] , Br [Formula: see text] , and I [Formula: see text] on the basis of quasi-chemical theory (QCT), here we study structures and free energies of hydration clusters for those anions. We confirm that energetically optimal [Formula: see text] clusters, with X = Cl [Formula: see text] , Br [Formula: see text] , and I [Formula: see text] , exhibit surface hydration structures. Computed free energies, based on optimized surface hydration structures utilizing a harmonic approximation, typically (but not always) disagree with experimental free energies. To remedy the harmonic approximation, we utilize single-point electronic structure calculations on cluster geometries sampled from an AIMD (ab initio molecular dynamics) simulation stream. This rough-landscape procedure is broadly satisfactory and suggests unfavorable ligand crowding as the physical effect addressed. Nevertheless, this procedure can break down when [Formula: see text] , with the characteristic discrepancy resulting from a relaxed definition of clustering in the identification of [Formula: see text] clusters, including ramified structures natural in physical cluster theories. With ramified structures, the central equation for the present rough-landscape approach can acquire some inconsistency. Extension of these physical cluster theories in the direction of QCT should remedy that issue, and should be the next step in this research direction. MDPI 2021-05-21 /pmc/articles/PMC8196753/ /pubmed/34064203 http://dx.doi.org/10.3390/molecules26113087 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Gomez, Diego T. Pratt, Lawrence R. Rogers, David M. Rempe, Susan B. Free Energies of Hydrated Halide Anions: High Through-Put Computations on Clusters to Treat Rough Energy-Landscapes |
title | Free Energies of Hydrated Halide Anions: High Through-Put Computations on Clusters to Treat Rough Energy-Landscapes |
title_full | Free Energies of Hydrated Halide Anions: High Through-Put Computations on Clusters to Treat Rough Energy-Landscapes |
title_fullStr | Free Energies of Hydrated Halide Anions: High Through-Put Computations on Clusters to Treat Rough Energy-Landscapes |
title_full_unstemmed | Free Energies of Hydrated Halide Anions: High Through-Put Computations on Clusters to Treat Rough Energy-Landscapes |
title_short | Free Energies of Hydrated Halide Anions: High Through-Put Computations on Clusters to Treat Rough Energy-Landscapes |
title_sort | free energies of hydrated halide anions: high through-put computations on clusters to treat rough energy-landscapes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8196753/ https://www.ncbi.nlm.nih.gov/pubmed/34064203 http://dx.doi.org/10.3390/molecules26113087 |
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