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Fragment-Based Ab Initio Molecular Dynamics Simulation for Combustion

We develop a fragment-based ab initio molecular dynamics (FB-AIMD) method for efficient dynamics simulation of the combustion process. In this method, the intermolecular interactions are treated by a fragment-based many-body expansion in which three- or higher body interactions are neglected, while...

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Detalles Bibliográficos
Autores principales: Cao, Liqun, Zeng, Jinzhe, Xu, Mingyuan, Chin, Chih-Hao, Zhu, Tong, Zhang, John Z. H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8197069/
https://www.ncbi.nlm.nih.gov/pubmed/34071128
http://dx.doi.org/10.3390/molecules26113120
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author Cao, Liqun
Zeng, Jinzhe
Xu, Mingyuan
Chin, Chih-Hao
Zhu, Tong
Zhang, John Z. H.
author_facet Cao, Liqun
Zeng, Jinzhe
Xu, Mingyuan
Chin, Chih-Hao
Zhu, Tong
Zhang, John Z. H.
author_sort Cao, Liqun
collection PubMed
description We develop a fragment-based ab initio molecular dynamics (FB-AIMD) method for efficient dynamics simulation of the combustion process. In this method, the intermolecular interactions are treated by a fragment-based many-body expansion in which three- or higher body interactions are neglected, while two-body interactions are computed if the distance between the two fragments is smaller than a cutoff value. The accuracy of the method was verified by comparing FB-AIMD calculated energies and atomic forces of several different systems with those obtained by standard full system quantum calculations. The computational cost of the FB-AIMD method scales linearly with the size of the system, and the calculation is easily parallelizable. The method is applied to methane combustion as a benchmark. Detailed reaction network of methane reaction is analyzed, and important reaction species are tracked in real time. The current result of methane simulation is in excellent agreement with known experimental findings and with prior theoretical studies.
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spelling pubmed-81970692021-06-13 Fragment-Based Ab Initio Molecular Dynamics Simulation for Combustion Cao, Liqun Zeng, Jinzhe Xu, Mingyuan Chin, Chih-Hao Zhu, Tong Zhang, John Z. H. Molecules Article We develop a fragment-based ab initio molecular dynamics (FB-AIMD) method for efficient dynamics simulation of the combustion process. In this method, the intermolecular interactions are treated by a fragment-based many-body expansion in which three- or higher body interactions are neglected, while two-body interactions are computed if the distance between the two fragments is smaller than a cutoff value. The accuracy of the method was verified by comparing FB-AIMD calculated energies and atomic forces of several different systems with those obtained by standard full system quantum calculations. The computational cost of the FB-AIMD method scales linearly with the size of the system, and the calculation is easily parallelizable. The method is applied to methane combustion as a benchmark. Detailed reaction network of methane reaction is analyzed, and important reaction species are tracked in real time. The current result of methane simulation is in excellent agreement with known experimental findings and with prior theoretical studies. MDPI 2021-05-23 /pmc/articles/PMC8197069/ /pubmed/34071128 http://dx.doi.org/10.3390/molecules26113120 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cao, Liqun
Zeng, Jinzhe
Xu, Mingyuan
Chin, Chih-Hao
Zhu, Tong
Zhang, John Z. H.
Fragment-Based Ab Initio Molecular Dynamics Simulation for Combustion
title Fragment-Based Ab Initio Molecular Dynamics Simulation for Combustion
title_full Fragment-Based Ab Initio Molecular Dynamics Simulation for Combustion
title_fullStr Fragment-Based Ab Initio Molecular Dynamics Simulation for Combustion
title_full_unstemmed Fragment-Based Ab Initio Molecular Dynamics Simulation for Combustion
title_short Fragment-Based Ab Initio Molecular Dynamics Simulation for Combustion
title_sort fragment-based ab initio molecular dynamics simulation for combustion
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8197069/
https://www.ncbi.nlm.nih.gov/pubmed/34071128
http://dx.doi.org/10.3390/molecules26113120
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