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Computational Study on Temperature Driven Structure–Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme
Glycosyltransferase (GTs) is a wide class of enzymes that transfer sugar moiety, playing a key role in the synthesis of bacterial exopolysaccharide (EPS) biopolymer. In recent years, increased demand for bacterial EPSs has been observed in pharmaceutical, food, and other industries. The application...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8198650/ https://www.ncbi.nlm.nih.gov/pubmed/34071348 http://dx.doi.org/10.3390/polym13111771 |
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author | González-Faune, Patricio Sánchez-Arévalo, Ignacio Sarkar, Shrabana Majhi, Krishnendu Bandopadhyay, Rajib Cabrera-Barjas, Gustavo Gómez, Aleydis Banerjee, Aparna |
author_facet | González-Faune, Patricio Sánchez-Arévalo, Ignacio Sarkar, Shrabana Majhi, Krishnendu Bandopadhyay, Rajib Cabrera-Barjas, Gustavo Gómez, Aleydis Banerjee, Aparna |
author_sort | González-Faune, Patricio |
collection | PubMed |
description | Glycosyltransferase (GTs) is a wide class of enzymes that transfer sugar moiety, playing a key role in the synthesis of bacterial exopolysaccharide (EPS) biopolymer. In recent years, increased demand for bacterial EPSs has been observed in pharmaceutical, food, and other industries. The application of the EPSs largely depends upon their thermal stability, as any industrial application is mainly reliant on slow thermal degradation. Keeping this in context, EPS producing GT enzymes from three different bacterial sources based on growth temperature (mesophile, thermophile, and hyperthermophile) are considered for in silico analysis of the structural–functional relationship. From the present study, it was observed that the structural integrity of GT increases significantly from mesophile to thermophile to hyperthermophile. In contrast, the structural plasticity runs in an opposite direction towards mesophile. This interesting temperature-dependent structural property has directed the GT–UDP-glucose interactions in a way that thermophile has finally demonstrated better binding affinity (−5.57 to −10.70) with an increased number of hydrogen bonds (355) and stabilizing amino acids (Phe, Ala, Glu, Tyr, and Ser). The results from this study may direct utilization of thermophile-origin GT as best for industrial-level bacterial polysaccharide production. |
format | Online Article Text |
id | pubmed-8198650 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81986502021-06-14 Computational Study on Temperature Driven Structure–Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme González-Faune, Patricio Sánchez-Arévalo, Ignacio Sarkar, Shrabana Majhi, Krishnendu Bandopadhyay, Rajib Cabrera-Barjas, Gustavo Gómez, Aleydis Banerjee, Aparna Polymers (Basel) Article Glycosyltransferase (GTs) is a wide class of enzymes that transfer sugar moiety, playing a key role in the synthesis of bacterial exopolysaccharide (EPS) biopolymer. In recent years, increased demand for bacterial EPSs has been observed in pharmaceutical, food, and other industries. The application of the EPSs largely depends upon their thermal stability, as any industrial application is mainly reliant on slow thermal degradation. Keeping this in context, EPS producing GT enzymes from three different bacterial sources based on growth temperature (mesophile, thermophile, and hyperthermophile) are considered for in silico analysis of the structural–functional relationship. From the present study, it was observed that the structural integrity of GT increases significantly from mesophile to thermophile to hyperthermophile. In contrast, the structural plasticity runs in an opposite direction towards mesophile. This interesting temperature-dependent structural property has directed the GT–UDP-glucose interactions in a way that thermophile has finally demonstrated better binding affinity (−5.57 to −10.70) with an increased number of hydrogen bonds (355) and stabilizing amino acids (Phe, Ala, Glu, Tyr, and Ser). The results from this study may direct utilization of thermophile-origin GT as best for industrial-level bacterial polysaccharide production. MDPI 2021-05-28 /pmc/articles/PMC8198650/ /pubmed/34071348 http://dx.doi.org/10.3390/polym13111771 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article González-Faune, Patricio Sánchez-Arévalo, Ignacio Sarkar, Shrabana Majhi, Krishnendu Bandopadhyay, Rajib Cabrera-Barjas, Gustavo Gómez, Aleydis Banerjee, Aparna Computational Study on Temperature Driven Structure–Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme |
title | Computational Study on Temperature Driven Structure–Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme |
title_full | Computational Study on Temperature Driven Structure–Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme |
title_fullStr | Computational Study on Temperature Driven Structure–Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme |
title_full_unstemmed | Computational Study on Temperature Driven Structure–Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme |
title_short | Computational Study on Temperature Driven Structure–Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme |
title_sort | computational study on temperature driven structure–function relationship of polysaccharide producing bacterial glycosyl transferase enzyme |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8198650/ https://www.ncbi.nlm.nih.gov/pubmed/34071348 http://dx.doi.org/10.3390/polym13111771 |
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