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The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair
In this contribution, we recall and test a new methodology designed to identify the favorable reaction pathway between two reactants. Applied to the formation of the DNA guanine (G) –cytosine (C) pair, we successfully predict the best orientation between the base pairs held together by hydrogen bond...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8199511/ https://www.ncbi.nlm.nih.gov/pubmed/34206097 http://dx.doi.org/10.3390/molecules26113336 |
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author | Klein, Johanna Fleurat-Lessard, Paul Pilmé, Julien |
author_facet | Klein, Johanna Fleurat-Lessard, Paul Pilmé, Julien |
author_sort | Klein, Johanna |
collection | PubMed |
description | In this contribution, we recall and test a new methodology designed to identify the favorable reaction pathway between two reactants. Applied to the formation of the DNA guanine (G) –cytosine (C) pair, we successfully predict the best orientation between the base pairs held together by hydrogen bonds and leading to the formation of the typical Watson Crick structure of the GC pair. Beyond the global minimum, some local stationary points of the targeted pair are also clearly identified. |
format | Online Article Text |
id | pubmed-8199511 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-81995112021-06-14 The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair Klein, Johanna Fleurat-Lessard, Paul Pilmé, Julien Molecules Article In this contribution, we recall and test a new methodology designed to identify the favorable reaction pathway between two reactants. Applied to the formation of the DNA guanine (G) –cytosine (C) pair, we successfully predict the best orientation between the base pairs held together by hydrogen bonds and leading to the formation of the typical Watson Crick structure of the GC pair. Beyond the global minimum, some local stationary points of the targeted pair are also clearly identified. MDPI 2021-06-01 /pmc/articles/PMC8199511/ /pubmed/34206097 http://dx.doi.org/10.3390/molecules26113336 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Klein, Johanna Fleurat-Lessard, Paul Pilmé, Julien The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair |
title | The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair |
title_full | The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair |
title_fullStr | The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair |
title_full_unstemmed | The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair |
title_short | The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair |
title_sort | topological analysis of the elf(x) localization function: quantitative prediction of hydrogen bonds in the guanine–cytosine pair |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8199511/ https://www.ncbi.nlm.nih.gov/pubmed/34206097 http://dx.doi.org/10.3390/molecules26113336 |
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