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The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair

In this contribution, we recall and test a new methodology designed to identify the favorable reaction pathway between two reactants. Applied to the formation of the DNA guanine (G) –cytosine (C) pair, we successfully predict the best orientation between the base pairs held together by hydrogen bond...

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Detalles Bibliográficos
Autores principales: Klein, Johanna, Fleurat-Lessard, Paul, Pilmé, Julien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8199511/
https://www.ncbi.nlm.nih.gov/pubmed/34206097
http://dx.doi.org/10.3390/molecules26113336
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author Klein, Johanna
Fleurat-Lessard, Paul
Pilmé, Julien
author_facet Klein, Johanna
Fleurat-Lessard, Paul
Pilmé, Julien
author_sort Klein, Johanna
collection PubMed
description In this contribution, we recall and test a new methodology designed to identify the favorable reaction pathway between two reactants. Applied to the formation of the DNA guanine (G) –cytosine (C) pair, we successfully predict the best orientation between the base pairs held together by hydrogen bonds and leading to the formation of the typical Watson Crick structure of the GC pair. Beyond the global minimum, some local stationary points of the targeted pair are also clearly identified.
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spelling pubmed-81995112021-06-14 The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair Klein, Johanna Fleurat-Lessard, Paul Pilmé, Julien Molecules Article In this contribution, we recall and test a new methodology designed to identify the favorable reaction pathway between two reactants. Applied to the formation of the DNA guanine (G) –cytosine (C) pair, we successfully predict the best orientation between the base pairs held together by hydrogen bonds and leading to the formation of the typical Watson Crick structure of the GC pair. Beyond the global minimum, some local stationary points of the targeted pair are also clearly identified. MDPI 2021-06-01 /pmc/articles/PMC8199511/ /pubmed/34206097 http://dx.doi.org/10.3390/molecules26113336 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Klein, Johanna
Fleurat-Lessard, Paul
Pilmé, Julien
The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair
title The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair
title_full The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair
title_fullStr The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair
title_full_unstemmed The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair
title_short The Topological Analysis of the ELF(x) Localization Function: Quantitative Prediction of Hydrogen Bonds in the Guanine–Cytosine Pair
title_sort topological analysis of the elf(x) localization function: quantitative prediction of hydrogen bonds in the guanine–cytosine pair
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8199511/
https://www.ncbi.nlm.nih.gov/pubmed/34206097
http://dx.doi.org/10.3390/molecules26113336
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