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Federated learning improves site performance in multicenter deep learning without data sharing

OBJECTIVE: To demonstrate enabling multi-institutional training without centralizing or sharing the underlying physical data via federated learning (FL). MATERIALS AND METHODS: Deep learning models were trained at each participating institution using local clinical data, and an additional model was...

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Autores principales: Sarma, Karthik V, Harmon, Stephanie, Sanford, Thomas, Roth, Holger R, Xu, Ziyue, Tetreault, Jesse, Xu, Daguang, Flores, Mona G, Raman, Alex G, Kulkarni, Rushikesh, Wood, Bradford J, Choyke, Peter L, Priester, Alan M, Marks, Leonard S, Raman, Steven S, Enzmann, Dieter, Turkbey, Baris, Speier, William, Arnold, Corey W
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8200268/
https://www.ncbi.nlm.nih.gov/pubmed/33537772
http://dx.doi.org/10.1093/jamia/ocaa341
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author Sarma, Karthik V
Harmon, Stephanie
Sanford, Thomas
Roth, Holger R
Xu, Ziyue
Tetreault, Jesse
Xu, Daguang
Flores, Mona G
Raman, Alex G
Kulkarni, Rushikesh
Wood, Bradford J
Choyke, Peter L
Priester, Alan M
Marks, Leonard S
Raman, Steven S
Enzmann, Dieter
Turkbey, Baris
Speier, William
Arnold, Corey W
author_facet Sarma, Karthik V
Harmon, Stephanie
Sanford, Thomas
Roth, Holger R
Xu, Ziyue
Tetreault, Jesse
Xu, Daguang
Flores, Mona G
Raman, Alex G
Kulkarni, Rushikesh
Wood, Bradford J
Choyke, Peter L
Priester, Alan M
Marks, Leonard S
Raman, Steven S
Enzmann, Dieter
Turkbey, Baris
Speier, William
Arnold, Corey W
author_sort Sarma, Karthik V
collection PubMed
description OBJECTIVE: To demonstrate enabling multi-institutional training without centralizing or sharing the underlying physical data via federated learning (FL). MATERIALS AND METHODS: Deep learning models were trained at each participating institution using local clinical data, and an additional model was trained using FL across all of the institutions. RESULTS: We found that the FL model exhibited superior performance and generalizability to the models trained at single institutions, with an overall performance level that was significantly better than that of any of the institutional models alone when evaluated on held-out test sets from each institution and an outside challenge dataset. DISCUSSION: The power of FL was successfully demonstrated across 3 academic institutions while avoiding the privacy risk associated with the transfer and pooling of patient data. CONCLUSION: Federated learning is an effective methodology that merits further study to enable accelerated development of models across institutions, enabling greater generalizability in clinical use.
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spelling pubmed-82002682021-06-14 Federated learning improves site performance in multicenter deep learning without data sharing Sarma, Karthik V Harmon, Stephanie Sanford, Thomas Roth, Holger R Xu, Ziyue Tetreault, Jesse Xu, Daguang Flores, Mona G Raman, Alex G Kulkarni, Rushikesh Wood, Bradford J Choyke, Peter L Priester, Alan M Marks, Leonard S Raman, Steven S Enzmann, Dieter Turkbey, Baris Speier, William Arnold, Corey W J Am Med Inform Assoc Brief Communications OBJECTIVE: To demonstrate enabling multi-institutional training without centralizing or sharing the underlying physical data via federated learning (FL). MATERIALS AND METHODS: Deep learning models were trained at each participating institution using local clinical data, and an additional model was trained using FL across all of the institutions. RESULTS: We found that the FL model exhibited superior performance and generalizability to the models trained at single institutions, with an overall performance level that was significantly better than that of any of the institutional models alone when evaluated on held-out test sets from each institution and an outside challenge dataset. DISCUSSION: The power of FL was successfully demonstrated across 3 academic institutions while avoiding the privacy risk associated with the transfer and pooling of patient data. CONCLUSION: Federated learning is an effective methodology that merits further study to enable accelerated development of models across institutions, enabling greater generalizability in clinical use. Oxford University Press 2021-02-04 /pmc/articles/PMC8200268/ /pubmed/33537772 http://dx.doi.org/10.1093/jamia/ocaa341 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Brief Communications
Sarma, Karthik V
Harmon, Stephanie
Sanford, Thomas
Roth, Holger R
Xu, Ziyue
Tetreault, Jesse
Xu, Daguang
Flores, Mona G
Raman, Alex G
Kulkarni, Rushikesh
Wood, Bradford J
Choyke, Peter L
Priester, Alan M
Marks, Leonard S
Raman, Steven S
Enzmann, Dieter
Turkbey, Baris
Speier, William
Arnold, Corey W
Federated learning improves site performance in multicenter deep learning without data sharing
title Federated learning improves site performance in multicenter deep learning without data sharing
title_full Federated learning improves site performance in multicenter deep learning without data sharing
title_fullStr Federated learning improves site performance in multicenter deep learning without data sharing
title_full_unstemmed Federated learning improves site performance in multicenter deep learning without data sharing
title_short Federated learning improves site performance in multicenter deep learning without data sharing
title_sort federated learning improves site performance in multicenter deep learning without data sharing
topic Brief Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8200268/
https://www.ncbi.nlm.nih.gov/pubmed/33537772
http://dx.doi.org/10.1093/jamia/ocaa341
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