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Bioactive Molecules of Tea as Potential Inhibitors for RNA-Dependent RNA Polymerase of SARS-CoV-2

The coronavirus disease (COVID-19), a worldwide pandemic, is caused by the severe acute respiratory syndrome-corona virus-2 (SARS-CoV-2). At this moment in time, there are no specific therapeutics available to combat COVID-19. Drug repurposing and identification of naturally available bioactive mole...

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Autores principales: Bhardwaj, Vijay Kumar, Singh, Rahul, Sharma, Jatin, Rajendran, Vidya, Purohit, Rituraj, Kumar, Sanjay
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8200525/
https://www.ncbi.nlm.nih.gov/pubmed/34136511
http://dx.doi.org/10.3389/fmed.2021.684020
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author Bhardwaj, Vijay Kumar
Singh, Rahul
Sharma, Jatin
Rajendran, Vidya
Purohit, Rituraj
Kumar, Sanjay
author_facet Bhardwaj, Vijay Kumar
Singh, Rahul
Sharma, Jatin
Rajendran, Vidya
Purohit, Rituraj
Kumar, Sanjay
author_sort Bhardwaj, Vijay Kumar
collection PubMed
description The coronavirus disease (COVID-19), a worldwide pandemic, is caused by the severe acute respiratory syndrome-corona virus-2 (SARS-CoV-2). At this moment in time, there are no specific therapeutics available to combat COVID-19. Drug repurposing and identification of naturally available bioactive molecules to target SARS-CoV-2 are among the key strategies to tackle the notorious virus. The enzyme RNA-dependent RNA polymerase (RdRp) performs a pivotal role in replicating the virus. RdRp is a prime target for Remdesivir and other nucleotides analog-based antiviral drugs. In this study, we showed three bioactive molecules from tea (epicatechin-3,5-di-O-gallate, epigallocatechin-3,5-di-O-gallate, and epigallocatechin-3,4-di-O-gallate) that showed better interaction with critical residues present at the catalytic center and the NTP entry channel of RdRp than antiviral drugs Remdesivir and Favipiravir. Our computational approach to identify these molecules included molecular docking studies, followed by robust molecular dynamics simulations. All the three molecules are readily available in tea and could be made accessible along with other medications to treat COVID-19 patients. However, these results require validation by further in vitro and in vivo studies.
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spelling pubmed-82005252021-06-15 Bioactive Molecules of Tea as Potential Inhibitors for RNA-Dependent RNA Polymerase of SARS-CoV-2 Bhardwaj, Vijay Kumar Singh, Rahul Sharma, Jatin Rajendran, Vidya Purohit, Rituraj Kumar, Sanjay Front Med (Lausanne) Medicine The coronavirus disease (COVID-19), a worldwide pandemic, is caused by the severe acute respiratory syndrome-corona virus-2 (SARS-CoV-2). At this moment in time, there are no specific therapeutics available to combat COVID-19. Drug repurposing and identification of naturally available bioactive molecules to target SARS-CoV-2 are among the key strategies to tackle the notorious virus. The enzyme RNA-dependent RNA polymerase (RdRp) performs a pivotal role in replicating the virus. RdRp is a prime target for Remdesivir and other nucleotides analog-based antiviral drugs. In this study, we showed three bioactive molecules from tea (epicatechin-3,5-di-O-gallate, epigallocatechin-3,5-di-O-gallate, and epigallocatechin-3,4-di-O-gallate) that showed better interaction with critical residues present at the catalytic center and the NTP entry channel of RdRp than antiviral drugs Remdesivir and Favipiravir. Our computational approach to identify these molecules included molecular docking studies, followed by robust molecular dynamics simulations. All the three molecules are readily available in tea and could be made accessible along with other medications to treat COVID-19 patients. However, these results require validation by further in vitro and in vivo studies. Frontiers Media S.A. 2021-05-31 /pmc/articles/PMC8200525/ /pubmed/34136511 http://dx.doi.org/10.3389/fmed.2021.684020 Text en Copyright © 2021 Bhardwaj, Singh, Sharma, Rajendran, Purohit and Kumar. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Bhardwaj, Vijay Kumar
Singh, Rahul
Sharma, Jatin
Rajendran, Vidya
Purohit, Rituraj
Kumar, Sanjay
Bioactive Molecules of Tea as Potential Inhibitors for RNA-Dependent RNA Polymerase of SARS-CoV-2
title Bioactive Molecules of Tea as Potential Inhibitors for RNA-Dependent RNA Polymerase of SARS-CoV-2
title_full Bioactive Molecules of Tea as Potential Inhibitors for RNA-Dependent RNA Polymerase of SARS-CoV-2
title_fullStr Bioactive Molecules of Tea as Potential Inhibitors for RNA-Dependent RNA Polymerase of SARS-CoV-2
title_full_unstemmed Bioactive Molecules of Tea as Potential Inhibitors for RNA-Dependent RNA Polymerase of SARS-CoV-2
title_short Bioactive Molecules of Tea as Potential Inhibitors for RNA-Dependent RNA Polymerase of SARS-CoV-2
title_sort bioactive molecules of tea as potential inhibitors for rna-dependent rna polymerase of sars-cov-2
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8200525/
https://www.ncbi.nlm.nih.gov/pubmed/34136511
http://dx.doi.org/10.3389/fmed.2021.684020
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