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Substantia Nigra Radiomics Feature Extraction of Parkinson’s Disease Based on Magnitude Images of Susceptibility-Weighted Imaging
BACKGROUND: It is reported that radiomic features extracted from quantitative susceptibility mapping (QSM) had promising clinical value for the diagnosis of Parkinson’s disease (PD). We aimed to explore the usefulness of radiomics features based on magnitude images to distinguish PD from non-PD cont...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8200854/ https://www.ncbi.nlm.nih.gov/pubmed/34135726 http://dx.doi.org/10.3389/fnins.2021.646617 |
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author | Ren, Qingguo Wang, Yihua Leng, Shanshan Nan, Xiaomin Zhang, Bin Shuai, Xinyan Zhang, Jianyuan Xia, Xiaona Li, Ye Ge, Yaqiong Meng, Xiangshui Zhao, Cuiping |
author_facet | Ren, Qingguo Wang, Yihua Leng, Shanshan Nan, Xiaomin Zhang, Bin Shuai, Xinyan Zhang, Jianyuan Xia, Xiaona Li, Ye Ge, Yaqiong Meng, Xiangshui Zhao, Cuiping |
author_sort | Ren, Qingguo |
collection | PubMed |
description | BACKGROUND: It is reported that radiomic features extracted from quantitative susceptibility mapping (QSM) had promising clinical value for the diagnosis of Parkinson’s disease (PD). We aimed to explore the usefulness of radiomics features based on magnitude images to distinguish PD from non-PD controls. METHODS: We retrospectively recruited PD patients and controls who underwent brain 3.0T MR including susceptibility-weighted imaging (SWI). A total of 396 radiomics features were extracted from the SN of 95 PD patients and 95 non-PD controls based on SWI. Intra-/inter-observer correlation coefficients (ICCs) were applied to measure the observer agreement for the radiomic feature extraction. Then the patients were randomly grouped into training and validation sets in a ratio of 7:3. In the training set, the maximum correlation minimum redundancy algorithm (mRMR) and the least absolute shrinkage and selection operator (LASSO) were conducted to filter and choose the optimized subset of features, and a radiomics signature was constructed. Moreover, radiomics signatures were constructed by different machine learning models. Area under the ROC curves (AUCs) were applied to evaluate the predictive performance of the models. Then correlation analysis was performed to evaluate the correlation between the optimized features and clinical factors. RESULTS: The intro-observer CC ranged from 0.82 to 1.0, and the inter-observer CC ranged from 0.77 to 0.99. The LASSO logistic regression model showed good prediction efficacy in the training set [AUC = 0.82, 95% confidence interval (CI, 0.74–0.88)] and the validation set [AUC = 0.81, 95% CI (0.68–0.91)]. One radiomic feature showed a moderate negative correlation with Hoehn-Yahr stage (r = −0.49, P = 0.012). CONCLUSION: Radiomic predictive features based on SWI magnitude images could reflect the Hoehn-Yahr stage of PD to some extent. |
format | Online Article Text |
id | pubmed-8200854 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82008542021-06-15 Substantia Nigra Radiomics Feature Extraction of Parkinson’s Disease Based on Magnitude Images of Susceptibility-Weighted Imaging Ren, Qingguo Wang, Yihua Leng, Shanshan Nan, Xiaomin Zhang, Bin Shuai, Xinyan Zhang, Jianyuan Xia, Xiaona Li, Ye Ge, Yaqiong Meng, Xiangshui Zhao, Cuiping Front Neurosci Neuroscience BACKGROUND: It is reported that radiomic features extracted from quantitative susceptibility mapping (QSM) had promising clinical value for the diagnosis of Parkinson’s disease (PD). We aimed to explore the usefulness of radiomics features based on magnitude images to distinguish PD from non-PD controls. METHODS: We retrospectively recruited PD patients and controls who underwent brain 3.0T MR including susceptibility-weighted imaging (SWI). A total of 396 radiomics features were extracted from the SN of 95 PD patients and 95 non-PD controls based on SWI. Intra-/inter-observer correlation coefficients (ICCs) were applied to measure the observer agreement for the radiomic feature extraction. Then the patients were randomly grouped into training and validation sets in a ratio of 7:3. In the training set, the maximum correlation minimum redundancy algorithm (mRMR) and the least absolute shrinkage and selection operator (LASSO) were conducted to filter and choose the optimized subset of features, and a radiomics signature was constructed. Moreover, radiomics signatures were constructed by different machine learning models. Area under the ROC curves (AUCs) were applied to evaluate the predictive performance of the models. Then correlation analysis was performed to evaluate the correlation between the optimized features and clinical factors. RESULTS: The intro-observer CC ranged from 0.82 to 1.0, and the inter-observer CC ranged from 0.77 to 0.99. The LASSO logistic regression model showed good prediction efficacy in the training set [AUC = 0.82, 95% confidence interval (CI, 0.74–0.88)] and the validation set [AUC = 0.81, 95% CI (0.68–0.91)]. One radiomic feature showed a moderate negative correlation with Hoehn-Yahr stage (r = −0.49, P = 0.012). CONCLUSION: Radiomic predictive features based on SWI magnitude images could reflect the Hoehn-Yahr stage of PD to some extent. Frontiers Media S.A. 2021-05-31 /pmc/articles/PMC8200854/ /pubmed/34135726 http://dx.doi.org/10.3389/fnins.2021.646617 Text en Copyright © 2021 Ren, Wang, Leng, Nan, Zhang, Shuai, Zhang, Xia, Li, Ge, Meng and Zhao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Ren, Qingguo Wang, Yihua Leng, Shanshan Nan, Xiaomin Zhang, Bin Shuai, Xinyan Zhang, Jianyuan Xia, Xiaona Li, Ye Ge, Yaqiong Meng, Xiangshui Zhao, Cuiping Substantia Nigra Radiomics Feature Extraction of Parkinson’s Disease Based on Magnitude Images of Susceptibility-Weighted Imaging |
title | Substantia Nigra Radiomics Feature Extraction of Parkinson’s Disease Based on Magnitude Images of Susceptibility-Weighted Imaging |
title_full | Substantia Nigra Radiomics Feature Extraction of Parkinson’s Disease Based on Magnitude Images of Susceptibility-Weighted Imaging |
title_fullStr | Substantia Nigra Radiomics Feature Extraction of Parkinson’s Disease Based on Magnitude Images of Susceptibility-Weighted Imaging |
title_full_unstemmed | Substantia Nigra Radiomics Feature Extraction of Parkinson’s Disease Based on Magnitude Images of Susceptibility-Weighted Imaging |
title_short | Substantia Nigra Radiomics Feature Extraction of Parkinson’s Disease Based on Magnitude Images of Susceptibility-Weighted Imaging |
title_sort | substantia nigra radiomics feature extraction of parkinson’s disease based on magnitude images of susceptibility-weighted imaging |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8200854/ https://www.ncbi.nlm.nih.gov/pubmed/34135726 http://dx.doi.org/10.3389/fnins.2021.646617 |
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