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Application Fields, Positions, and Bioinformatic Mining of Non-active Sites: A Mini-Review

Active sites of enzymes play a vital role in catalysis, and researchhas been focused on the interactions between active sites and substrates to understand the biocatalytic process. However, the active sites distal to the catalytic cavity also participate in catalysis by maintaining the catalytic con...

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Autores principales: Wang, Xiaoxiao, Ma, Qinyuan, Shen, Jian, Wang, Bin, Gao, Xiuzhen, Zhao, Liming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8201498/
https://www.ncbi.nlm.nih.gov/pubmed/34136463
http://dx.doi.org/10.3389/fchem.2021.661008
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author Wang, Xiaoxiao
Ma, Qinyuan
Shen, Jian
Wang, Bin
Gao, Xiuzhen
Zhao, Liming
author_facet Wang, Xiaoxiao
Ma, Qinyuan
Shen, Jian
Wang, Bin
Gao, Xiuzhen
Zhao, Liming
author_sort Wang, Xiaoxiao
collection PubMed
description Active sites of enzymes play a vital role in catalysis, and researchhas been focused on the interactions between active sites and substrates to understand the biocatalytic process. However, the active sites distal to the catalytic cavity also participate in catalysis by maintaining the catalytic conformations. Therefore, some researchers have begun to investigate the roles of non-active sites in proteins, especially for enzyme families with different functions. In this mini-review, we focused on recent progress in research on non-active sites of enzymes. First, we outlined two major research methodswith non-active sites as direct targets, including understanding enzymatic mechanisms and enzyme engineering. Second, we classified the positions of reported non-active sites in enzyme structures and studied the molecular mechanisms underlying their functions, according to the literature on non-active sites. Finally, we summarized the results of bioinformatic analysisof mining non-active sites as targets for protein engineering.
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spelling pubmed-82014982021-06-15 Application Fields, Positions, and Bioinformatic Mining of Non-active Sites: A Mini-Review Wang, Xiaoxiao Ma, Qinyuan Shen, Jian Wang, Bin Gao, Xiuzhen Zhao, Liming Front Chem Chemistry Active sites of enzymes play a vital role in catalysis, and researchhas been focused on the interactions between active sites and substrates to understand the biocatalytic process. However, the active sites distal to the catalytic cavity also participate in catalysis by maintaining the catalytic conformations. Therefore, some researchers have begun to investigate the roles of non-active sites in proteins, especially for enzyme families with different functions. In this mini-review, we focused on recent progress in research on non-active sites of enzymes. First, we outlined two major research methodswith non-active sites as direct targets, including understanding enzymatic mechanisms and enzyme engineering. Second, we classified the positions of reported non-active sites in enzyme structures and studied the molecular mechanisms underlying their functions, according to the literature on non-active sites. Finally, we summarized the results of bioinformatic analysisof mining non-active sites as targets for protein engineering. Frontiers Media S.A. 2021-05-31 /pmc/articles/PMC8201498/ /pubmed/34136463 http://dx.doi.org/10.3389/fchem.2021.661008 Text en Copyright © 2021 Wang, Ma, Shen, Wang, Gao and Zhao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Chemistry
Wang, Xiaoxiao
Ma, Qinyuan
Shen, Jian
Wang, Bin
Gao, Xiuzhen
Zhao, Liming
Application Fields, Positions, and Bioinformatic Mining of Non-active Sites: A Mini-Review
title Application Fields, Positions, and Bioinformatic Mining of Non-active Sites: A Mini-Review
title_full Application Fields, Positions, and Bioinformatic Mining of Non-active Sites: A Mini-Review
title_fullStr Application Fields, Positions, and Bioinformatic Mining of Non-active Sites: A Mini-Review
title_full_unstemmed Application Fields, Positions, and Bioinformatic Mining of Non-active Sites: A Mini-Review
title_short Application Fields, Positions, and Bioinformatic Mining of Non-active Sites: A Mini-Review
title_sort application fields, positions, and bioinformatic mining of non-active sites: a mini-review
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8201498/
https://www.ncbi.nlm.nih.gov/pubmed/34136463
http://dx.doi.org/10.3389/fchem.2021.661008
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