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lamaGOET: an interface for quantum crystallography
In quantum crystallography, theoretical calculations and crystallographic refinements are closely intertwined. This means that the employed software must be able to perform both quantum-mechanical calculations and crystallographic least-squares refinements. So far, the program Tonto is the only one...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8202027/ https://www.ncbi.nlm.nih.gov/pubmed/34188618 http://dx.doi.org/10.1107/S1600576721002545 |
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author | Malaspina, Lorraine A. Genoni, Alessandro Grabowsky, Simon |
author_facet | Malaspina, Lorraine A. Genoni, Alessandro Grabowsky, Simon |
author_sort | Malaspina, Lorraine A. |
collection | PubMed |
description | In quantum crystallography, theoretical calculations and crystallographic refinements are closely intertwined. This means that the employed software must be able to perform both quantum-mechanical calculations and crystallographic least-squares refinements. So far, the program Tonto is the only one able to do that. The lamaGOET interface described herein deals with this issue since it interfaces dedicated quantum-chemical software (the widely used Gaussian package and the specialized ELMOdb program) with the refinement capabilities of Tonto. Three different flavours of quantum-crystallographic refinements of the dipetide glycyl-l-threonine dihydrate are presented to showcase the capabilities of lamaGOET: Hirshfeld atom refinement (HAR), HAR-ELMO, namely HAR coupled with extremely localized molecular orbitals, and X-ray constrained wavefunction fitting. |
format | Online Article Text |
id | pubmed-8202027 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-82020272021-06-28 lamaGOET: an interface for quantum crystallography Malaspina, Lorraine A. Genoni, Alessandro Grabowsky, Simon J Appl Crystallogr Computer Programs In quantum crystallography, theoretical calculations and crystallographic refinements are closely intertwined. This means that the employed software must be able to perform both quantum-mechanical calculations and crystallographic least-squares refinements. So far, the program Tonto is the only one able to do that. The lamaGOET interface described herein deals with this issue since it interfaces dedicated quantum-chemical software (the widely used Gaussian package and the specialized ELMOdb program) with the refinement capabilities of Tonto. Three different flavours of quantum-crystallographic refinements of the dipetide glycyl-l-threonine dihydrate are presented to showcase the capabilities of lamaGOET: Hirshfeld atom refinement (HAR), HAR-ELMO, namely HAR coupled with extremely localized molecular orbitals, and X-ray constrained wavefunction fitting. International Union of Crystallography 2021-04-16 /pmc/articles/PMC8202027/ /pubmed/34188618 http://dx.doi.org/10.1107/S1600576721002545 Text en © Lorraine A. Malaspina et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Computer Programs Malaspina, Lorraine A. Genoni, Alessandro Grabowsky, Simon lamaGOET: an interface for quantum crystallography |
title |
lamaGOET: an interface for quantum crystallography |
title_full |
lamaGOET: an interface for quantum crystallography |
title_fullStr |
lamaGOET: an interface for quantum crystallography |
title_full_unstemmed |
lamaGOET: an interface for quantum crystallography |
title_short |
lamaGOET: an interface for quantum crystallography |
title_sort | lamagoet: an interface for quantum crystallography |
topic | Computer Programs |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8202027/ https://www.ncbi.nlm.nih.gov/pubmed/34188618 http://dx.doi.org/10.1107/S1600576721002545 |
work_keys_str_mv | AT malaspinalorrainea lamagoetaninterfaceforquantumcrystallography AT genonialessandro lamagoetaninterfaceforquantumcrystallography AT grabowskysimon lamagoetaninterfaceforquantumcrystallography |